Hg_chrom8_TN10mRNA_15402
Organism: Heterodera glycines Gene Locus: chr8:4405798-4407408 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.364 | 1.184 | 0.225 | 1.412 | 1.002 | 0.814 | 0.489 | 0.796 | 1.673 | 1.283 | 1.724 | 0.814 | 0.251 | 1.33 | 1.117 | 0.854 | 0.79 | 1.002 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14546
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.462
|
0.132
|
0.034
|
0.556
|
0.234
|
0.121
|
0.355
|
0.022
|
0.248
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011880
|
1.000
|
1.000
|
Hsc_gene_3069.t1
|
Hsc_gene_3069.t1
|
— |
Q9VQ93.1 Golgi phosphoprotein 3 homolog sauron [Drosophila melanogaster]
|
KAH7700928.1 trans-Golgi protein GMx33 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070273
|
GO:0005575_0.922|GO:0110165_0.912|GO:0005622_0.887|GO:0016020_0.854|GO:0043226_0.842|GO:0043229_0.820|GO:0005737_0.803|GO:0043227_0.778|GO:0043231_0.760|GO:0071944_0.716|GO:0008150_0.715|GO:0005886_0.706|GO:0009987_0.665|GO:0005773_0.626|GO:0012505_0.607|GO:0005794_0.556|GO:0003674_0.553|GO:0051179_0.537|GO:0005488_0.516
|
IPR008628+2-307_57-277+|IPR038261+51-307+
|
— |
PF05719+57-277+Golgi_phosphoprotein_3_(GPP34)
|
G3DSA:1.10.3630.10:FF:000004+52-307+Probable_VPS74-protein_involved_in_protein-vacuolar_targeting
|
PTHR12704+2-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56
|
1.000
|
57-307
|
3kn1_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
34652.310
|
7.248
|
1.500
|
30.945
|
7.492
|
53.746
|
46.254
|
15.961
|
14.984
|
46.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1472.655
|
690.716
|
1151.517
|
1225.756
|
1522.340
|
3335.188
|
2477.959
|
3453.000
|
1233.301
|
321.713
|
712.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
0.690
|
0.199
|
0.281
|
1.146
|
-0.417
|
— |
-0.335
|
— | — | — | — | — |
No JSON data available for plots.