SCN Proteipedia

Hg_chrom8_TN10mRNA_15405

Organism: Heterodera glycines Gene Locus: chr8:4410194-4413517 Feature type: polypeptide

Protein Sequence

Length: 773

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.632	1.143	1.247	0.357	1.768	0.995	0.678	0.97	0.719	0.874	2.195	1.37	0.898	0.721	0.95	1.09	0.679	0.843	1.194	0.761	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14548	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.896

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKK,KKRK,PSKKRVK,KRKEETSNEKKKGEK,KKSKESTSKSRKKNE,KKSKSVDEKMAKKYER,KRKARSKEEKKAEKEE,KKKGEKAEEVVPKKSKE,KKQEYKELKDQLKKSKS	—	—	—	—	—	—	0.000	—	—	0.972	0.056	0.017	0.145	0.074	0.075	0.039	0.001	0.042	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011881	1.000	1.000	Hsc_gene_3066.t1	Hsc_gene_3066.t1	—	O17966.1 DNA topoisomerase 1 [Caenorhabditis elegans]	KAI3416079.1 DNA topoisomerase 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003917\|GO:0005694\|GO:0006265	GO:0005575_0.910\|GO:0110165_0.910\|GO:0005622_0.890\|GO:0043226_0.858\|GO:0043229_0.849\|GO:0016020_0.838\|GO:0043227_0.798\|GO:0043231_0.773\|GO:0008150_0.700\|GO:0005634_0.661\|GO:0009987_0.658\|GO:0003674_0.629\|GO:0005488_0.619\|GO:0043228_0.595\|GO:0043232_0.595\|GO:0071840_0.571\|GO:0005737_0.564\|GO:0016043_0.555\|GO:0008152_0.547\|GO:0043170_0.547\|GO:0044238_0.537\|GO:0006139_0.523\|GO:0097159_0.516\|GO:0090304_0.512\|GO:0003676_0.507	IPR001631+381-390_494-513_518-532_545-561_603-617_725-736+\|IPR008336+236-449+\|IPR011010+452-771+\|IPR013030+220-449+\|IPR013034+253-340+\|IPR013499+381-745+\|IPR013500+452-684_458-658+\|IPR014711+452-606+\|IPR014727+607-773+\|IPR018521+718-736+\|IPR025834+703-773+\|IPR036202+217-450+\|IPR048045+237-450+\|IPR051062+53-773+	SM00435+381-745+	PF01028+452-684+Eukaryotic_DNA_topoisomerase_I,_catalytic_core\|PF02919+236-449+Eukaryotic_DNA_topoisomerase_I,_DNA_binding_fragment\|PF14370+703-773+C-terminal_topoisomerase_domain	G3DSA:1.10.10.41:FF:000001+253-340+DNA_topoisomerase_I\|G3DSA:1.10.132.10:FF:000001+607-773+DNA_topoisomerase_I\|G3DSA:2.170.11.10:FF:000001+334-449+DNA_topoisomerase_I\|G3DSA:3.90.15.10:FF:000001+452-606+DNA_topoisomerase_I	PTHR10290+53-773+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-232;638-691	2.000	233-637;692-773	1tl8_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.785	88719.100	9.228	20.500	38.551	9.314	59.120	40.880	21.087	17.464	45.019

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	yellow	4285.191	2821.666	2910.242	3122.305	3444.893	4572.051	2772.450	4073.809	5601.939	5652.224	5630.673

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.184	—	0.209	0.110	0.423	-0.711	-0.272	-0.412	—	—	—	—	—

No JSON data available for plots.

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