Hg_chrom8_TN10mRNA_15411
Organism: Heterodera glycines Gene Locus: chr8:4432979-4435199 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 1.07 | 0.792 | 0.25 | 2.098 | 1.242 | 0.778 | 0.484 | 0.807 | 0.785 | 1.357 | 2.136 | 1.009 | 0.698 | 2.322 | 0.969 | 1.111 | 0.697 | 0.186 | 0.285 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14554
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKNENKEDQVRNRRL,KKREKEMEIQSLRRQKA,RKIIIGPESSDRNAKRGRY,RRQKAIEQSAEEKTKHFRR,RMKQSPKMERRGKKRRGPKRARNRPN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.897
|
0.093
|
0.030
|
0.278
|
0.028
|
0.013
|
0.043
|
0.011
|
0.033
|
0.187
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011884
|
1.000
|
1.000
|
Hsc_gene_3060.t1
|
Hsc_gene_3060.t1
|
— | — |
KAI1715058.1 pinin/SDK/memA/ protein conserved region domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.952|GO:0110165_0.947|GO:0005622_0.740|GO:0008150_0.715|GO:0043226_0.705|GO:0016020_0.704|GO:0043229_0.693|GO:0009987_0.681|GO:0043227_0.621|GO:0043231_0.588|GO:0005634_0.534
|
IPR006786+126-254+|IPR039853+65-385+
|
— |
PF04696+126-254+pinin/SDK/memA/_protein_conserved_region
|
— |
PTHR12707+65-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-413
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
47616.650
|
10.210
|
16.000
|
38.257
|
5.811
|
61.259
|
38.741
|
21.308
|
16.949
|
43.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
4548.553
|
8480.472
|
5475.894
|
4619.258
|
4027.798
|
3207.060
|
2979.535
|
4790.585
|
6725.214
|
2263.282
|
4175.539
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.862
|
-1.014
|
-0.136
|
-0.230
|
-0.314
|
— |
0.474
|
-0.542
|
1.463
|
— | — | — | — |
No JSON data available for plots.