Hg_chrom8_TN10mRNA_15412
Organism: Heterodera glycines Gene Locus: chr8:4435395-4437888 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.002 | 0.911 | 0.712 | 0.649 | 1.254 | 1.085 | 1.138 | 0.705 | 1.045 | 1.123 | 0.594 | 1.106 | 1.959 | 1.236 | 1.375 | 0.985 | 0.591 | 0.855 | 1.085 | 0.691 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14555
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRESGGRGKAENGGERNGKEQKWQMPKGKKEEAKQKL
|
— | — |
12-41
|
0.995
|
— | — |
0.000
|
— | — |
0.226
|
0.211
|
0.055
|
0.768
|
0.155
|
0.214
|
0.111
|
0.144
|
0.181
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011885
|
1.000
|
1.000
|
Hsc_gene_3058.t1
|
Hsc_gene_3058.t1
|
— |
Q04456.1 Gut esterase 1 [Caenorhabditis briggsae]
|
KAI1729775.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.840|GO:0005575_0.751|GO:0110165_0.745|GO:0003674_0.734|GO:0009987_0.703|GO:0016020_0.627|GO:0043226_0.571|GO:0005622_0.545
|
IPR002018+23-576+|IPR029058+2-620_22-577+
|
— |
PF00135+23-576+Carboxylesterase_family
|
— |
PTHR44590+457-563+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
253-302
|
2.000
|
1-252;303-638
|
2h7c_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
70607.210
|
6.426
|
-0.500
|
23.511
|
12.226
|
42.163
|
57.837
|
12.069
|
11.442
|
50.470
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
midnightblue
|
772.427
|
396.008
|
1149.700
|
721.967
|
673.951
|
1084.222
|
1517.947
|
1194.684
|
610.821
|
394.321
|
487.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.308
|
0.729
|
-0.562
|
-0.131
|
0.700
|
0.497
|
— |
0.489
|
— | — | — | — | — |
No JSON data available for plots.