Hg_chrom8_TN10mRNA_15420
Organism: Heterodera glycines Gene Locus: chr8:4466696-4468830 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.134 | 0.814 | 0.727 | 1.207 | 1.25 | 1.474 | 0.417 | 2.0 | 1.111 | 0.946 | 0.379 | 1.912 | 0.972 | 1.106 | 1.735 | 1.214 | 1.148 | 0.758 | 0.577 | 0.515 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14563
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.746
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKKHSDGEPPRIRCR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.736
|
0.188
|
0.009
|
0.488
|
0.097
|
0.119
|
0.185
|
0.017
|
0.109
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004732
|
2.000
|
1.000
|
Hsc_gene_3064.t1
|
— | — |
Q09441.1 SWI/SNF nucleosome remodeling complex component [Caenorhabditis elegans]
|
KAF7636386.1 ARID domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0009987_0.911|GO:0008283_0.719|GO:0005575_0.634|GO:0110165_0.623|GO:0065007_0.575|GO:0050789_0.571|GO:0050794_0.561|GO:0016020_0.537|GO:0005622_0.534|GO:0003674_0.527|GO:0005488_0.525|GO:0032501_0.513|GO:0032502_0.501|GO:0048856_0.501
|
IPR052406+1-146+
|
— | — | — |
PTHR22970+1-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
108-214;351-400
|
2.000
|
1-107;215-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
44984.910
|
7.156
|
6.000
|
26.500
|
10.000
|
51.250
|
48.750
|
15.000
|
11.500
|
50.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
140.547
|
76.190
|
112.912
|
87.984
|
96.943
|
86.928
|
245.932
|
161.157
|
73.531
|
234.227
|
165.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.339
|
— | — | — | — |
1.510
|
0.784
|
0.752
|
— | — | — | — | — |
No JSON data available for plots.