Hg_chrom8_TN10mRNA_15422
Organism: Heterodera glycines Gene Locus: chr8:4474357-4478577 Feature type: polypeptideProtein Sequence
Length: 881
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.056 | 1.135 | 0.846 | 0.861 | 1.173 | 1.281 | 0.486 | 1.589 | 0.933 | 1.334 | 0.533 | 1.602 | 1.387 | 1.004 | 1.344 | 1.168 | 0.837 | 0.826 | 1.222 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14565
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.847
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKR,KRDQFYQNIRSFYKRKWG,RKQKRDQFYQNIRSFYKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.819
|
0.114
|
0.008
|
0.414
|
0.053
|
0.128
|
0.089
|
0.015
|
0.080
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004732
|
2.000
|
1.000
|
Hsc_gene_3064.t1
|
Hsc_gene_3064.t1
|
— |
Q09441.1 SWI/SNF nucleosome remodeling complex component [Caenorhabditis elegans]
|
KAF7636386.1 ARID domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.967|GO:0009987_0.925|GO:0008283_0.702|GO:0005575_0.647|GO:0110165_0.641|GO:0065007_0.566|GO:0016020_0.564|GO:0050789_0.553|GO:0005622_0.546|GO:0003674_0.545|GO:0050794_0.539|GO:0071944_0.531|GO:0005886_0.507
|
IPR001606+24-116_25-117_27-112+|IPR011989+291-468+|IPR016024+294-841+|IPR036431+16-134_19-118+|IPR052406+24-543+
|
SM00501+25-117+|SM01014+21-112+
|
PF01388+27-112+ARID/BRIGHT_DNA_binding_domain
|
— |
PTHR22970+24-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
488-613;832-881
|
2.000
|
1-487;614-831
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
99576.050
|
6.502
|
0.000
|
24.972
|
11.918
|
48.127
|
51.873
|
13.280
|
11.691
|
49.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
705.219
|
500.458
|
612.737
|
597.475
|
675.046
|
644.145
|
861.056
|
553.678
|
1401.751
|
367.295
|
810.634
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.119
|
— |
0.144
|
— |
0.429
|
-0.324
|
0.779
|
— | — | — | — | — |
No JSON data available for plots.