Hg_chrom8_TN10mRNA_15430
Organism: Heterodera glycines Gene Locus: chr8:4509344-4511527 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.048 | 0.819 | 0.814 | 0.966 | 1.1 | 1.099 | 1.395 | 1.526 | 1.508 | 0.715 | 0.379 | 1.55 | 0.949 | 1.095 | 0.797 | 0.879 | 1.138 | 0.66 | 0.694 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14573
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.468
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRLQEVGAEIGVTTRRKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.306
|
0.272
|
0.064
|
0.696
|
0.259
|
0.152
|
0.319
|
0.026
|
0.034
|
0.445
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000924
|
4.000
|
2.000
|
Hsc_gene_3019.t1;Hsc_gene_3048.t1
|
Hsc_gene_3019.t1;Hsc_gene_3048.t1;Hsc_gene_6775.t1
|
— |
A8X7H5.2 Adenylosuccinate synthetase [Caenorhabditis briggsae]
|
KAI3416054.1 Adenylosuccinate synthetase [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004019|GO:0006164
|
GO:0005575_0.809|GO:0110165_0.793|GO:0008150_0.704|GO:0005622_0.663|GO:0003674_0.654|GO:0005737_0.641|GO:0009987_0.641|GO:0003824_0.543
|
IPR001114+1-466_55-459_55-460+|IPR027417+55-461+|IPR042109+55-296+|IPR042110+139-229+|IPR042111+297-464+
|
SM00788+55-460+
|
PF00709+55-459+Adenylosuccinate_synthetase
|
G3DSA:3.90.170.10:FF:000001+297-463+Adenylosuccinate_synthetase
|
PTHR11846+55-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-466
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
51583.280
|
7.254
|
5.500
|
23.176
|
11.588
|
42.918
|
57.082
|
12.876
|
10.300
|
49.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
196.524
|
161.074
|
232.600
|
128.612
|
124.503
|
116.329
|
154.115
|
238.486
|
283.265
|
213.947
|
243.655
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.300
|
-0.462
|
-0.746
|
— | — |
0.414
|
0.931
|
-0.488
|
— | — | — | — | — |
No JSON data available for plots.