Hg_chrom8_TN10mRNA_15431
Organism: Heterodera glycines Gene Locus: chr8:4515786-4518661 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 0.995 | 1.147 | 0.388 | 1.389 | 1.386 | 1.367 | 1.239 | 1.151 | 1.126 | 0.717 | 1.59 | 1.126 | 0.693 | 0.873 | 0.997 | 0.702 | 1.024 | 1.213 | 0.729 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14574
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.891
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm|lysosome_vacuole
|
— |
RKSRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.184
|
0.220
|
0.057
|
0.492
|
0.441
|
0.640
|
0.501
|
0.031
|
0.349
|
0.316
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000177
|
10.000
|
2.000
|
Hsc_gene_3110.t1;Hsc_gene_3110.t2
|
Hsc_gene_3110.t1;Hsc_gene_3110.t2;Hsc_gene_6758.t1;Hsc_gene_6758.t2
|
— |
Q709C8.1 Intermembrane lipid transfer protein VPS13C [Homo sapiens]
|
CDQ02870.2 Bm5678 [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.943|GO:0005575_0.903|GO:0110165_0.903|GO:0005622_0.825|GO:0016020_0.781|GO:0043226_0.771|GO:0005737_0.763|GO:0043229_0.755|GO:0043227_0.714|GO:0071944_0.711|GO:0043231_0.705|GO:0005886_0.676|GO:0008152_0.615|GO:0005773_0.590|GO:0031982_0.585|GO:0012505_0.574|GO:0031090_0.568|GO:0031410_0.556|GO:0097708_0.556|GO:0098588_0.553|GO:0009987_0.537
|
IPR009543+20-184+|IPR026847+4-353+
|
— |
PF06650+20-184+Vacuolar-sorting_associated_protein_13,_adaptor_binding_domain
|
— |
PTHR16166+4-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
336-444
|
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
48890.710
|
4.580
|
-19.500
|
26.126
|
10.586
|
47.072
|
52.928
|
11.486
|
14.640
|
50.450
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
128.103
|
50.161
|
58.921
|
85.121
|
113.661
|
217.687
|
460.348
|
92.828
|
13.062
|
146.132
|
89.102
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.626
|
0.638
|
0.387
|
0.950
|
1.092
|
-1.335
|
2.454
|
— | — | — | — | — |
No JSON data available for plots.