Hg_chrom8_TN10mRNA_15432
Organism: Heterodera glycines Gene Locus: chr8:4519016-4519939 Feature type: polypeptideProtein Sequence
Length: 224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.402 | 0.623 | 1.055 | 0.308 | 1.042 | 1.488 | 0.691 | 0.893 | 1.984 | 1.146 | 0.744 | 0.788 | 0.992 | 1.116 | 1.367 | 0.446 | 0.951 | 1.218 | 0.343 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14575
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.409
|
0.430
|
0.072
|
0.631
|
0.178
|
0.293
|
0.269
|
0.088
|
0.101
|
0.357
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004734
|
2.000
|
1.000
|
Hsc_gene_3051.t1
|
Hsc_gene_3051.t1
|
— |
P9WHK0.1 Putative phosphoribosyl transferase MT0597 [Mycobacterium tuberculosis CDC1551]
|
KAF7627188.1 Pribosyltran domain-containing protein [Meloidogyne graminicola]
|
WP_277365105
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.888|GO:0110165_0.879|GO:0005622_0.794|GO:0005737_0.794|GO:0071944_0.710|GO:0005829_0.649|GO:0030312_0.579|GO:0005618_0.575|GO:0009274_0.567
|
IPR000836+12-191_17-193+|IPR029057+4-206_5-207+|IPR052036+7-180+
|
— |
PF00156+12-191+Phosphoribosyl_transferase_domain
|
— |
PTHR31299+7-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
24634.420
|
6.868
|
1.000
|
25.446
|
7.589
|
42.857
|
57.143
|
13.393
|
12.054
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
57.792
|
3.129
|
15.731
|
12.964
|
19.868
|
39.784
|
63.968
|
77.947
|
156.427
|
47.999
|
94.468
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.092
|
1.912
|
— | — |
1.012
|
0.693
|
0.860
|
— | — | — | — | — | — |
No JSON data available for plots.