Hg_chrom8_TN10mRNA_15433
Organism: Heterodera glycines Gene Locus: chr8:4525421-4526537 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.353 | 0.401 | 1.097 | 0.446 | 1.221 | 1.437 | 0.718 | 0.862 | 2.011 | 1.048 | 0.849 | 1.014 | 0.838 | 1.078 | 1.407 | 0.369 | 0.989 | 1.241 | 0.332 | 0.507 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14576
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.879
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.426
|
0.053
|
0.475
|
0.097
|
0.335
|
0.269
|
0.259
|
0.115
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004734
|
2.000
|
1.000
|
Hsc_gene_3051.t1
|
Hsc_gene_3051.t1
|
— |
P9WHK0.1 Putative phosphoribosyl transferase MT0597 [Mycobacterium tuberculosis CDC1551]
|
KAF7627188.1 Pribosyltran domain-containing protein [Meloidogyne graminicola]
|
HMO31037
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.885|GO:0110165_0.872|GO:0005622_0.803|GO:0005737_0.791|GO:0071944_0.705|GO:0005829_0.668|GO:0030312_0.582|GO:0005618_0.576|GO:0009274_0.569
|
IPR000836+12-191_17-193+|IPR029057+4-222_5-216+|IPR052036+7-222+
|
— |
PF00156+12-191+Phosphoribosyl_transferase_domain
|
— |
PTHR31299+7-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-232
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
25578.550
|
6.493
|
0.000
|
27.586
|
6.897
|
43.534
|
56.466
|
14.224
|
13.362
|
49.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
97.569
|
2.753
|
16.675
|
13.605
|
18.725
|
44.056
|
101.779
|
74.534
|
7.921
|
318.875
|
185.609
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.364
|
2.168
|
— | — |
1.246
|
1.221
|
0.647
|
0.597
|
-5.473
|
— | — | — | — |
No JSON data available for plots.