Hg_chrom8_TN10mRNA_15434
Organism: Heterodera glycines Gene Locus: chr8:4527433-4531513 Feature type: polypeptideProtein Sequence
Length: 656
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 0.886 | 0.582 | 0.631 | 0.635 | 0.821 | 0.653 | 1.296 | 1.186 | 1.648 | 0.554 | 0.807 | 2.117 | 0.879 | 0.871 | 1.742 | 0.675 | 1.155 | 1.173 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14577
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.770
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
33-53
|
0.999
|
15-43
|
0.999
|
— | — |
0.000
|
— | — |
0.177
|
0.121
|
0.049
|
0.193
|
0.318
|
0.393
|
0.352
|
0.061
|
0.394
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011891
|
1.000
|
1.000
|
Hsc_gene_3050.t1
|
— | — |
Q503P5.1 Solute carrier family 49 member A3 [Danio rerio]
|
KAI1700938.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.958|GO:0009987_0.849|GO:0051179_0.770|GO:0005575_0.766|GO:0110165_0.766|GO:0006810_0.765|GO:0051234_0.765|GO:0016020_0.724|GO:0003674_0.708|GO:0071944_0.648|GO:0071705_0.646|GO:0005886_0.636|GO:0055085_0.631|GO:0005215_0.581|GO:0022857_0.581|GO:0005622_0.542|GO:0015695_0.527|GO:0043226_0.526|GO:0015871_0.523|GO:0005737_0.511|GO:0015101_0.508|GO:0015220_0.508
|
IPR011701+214-533+|IPR036259+145-584_150-583+|IPR049680+132-595+
|
— |
PF07690+214-533+Major_Facilitator_Superfamily
|
— |
PTHR10924+132-595+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
641-656
|
1.000
|
1-640
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
72135.260
|
8.353
|
14.500
|
17.530
|
14.177
|
40.854
|
59.146
|
10.518
|
7.012
|
51.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
923.712
|
212.415
|
370.513
|
206.006
|
454.125
|
965.009
|
2337.793
|
549.918
|
195.540
|
1983.668
|
1217.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
— |
-0.737
|
1.110
|
1.100
|
1.287
|
-0.921
|
2.232
|
-3.446
|
— | — | — | — |
No JSON data available for plots.