Hg_chrom8_TN10mRNA_15437
Organism: Heterodera glycines Gene Locus: chr8:4536035-4539558 Feature type: polypeptideProtein Sequence
Length: 788
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.856 | 0.679 | 0.969 | 0.481 | 1.671 | 1.497 | 0.544 | 0.761 | 0.874 | 1.063 | 1.231 | 1.642 | 1.022 | 1.049 | 1.165 | 1.342 | 1.352 | 0.615 | 0.293 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14580
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKAATTIASSALPPRKTPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.326
|
0.096
|
0.016
|
0.730
|
0.075
|
0.133
|
0.176
|
0.032
|
0.177
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011893
|
1.000
|
1.000
|
Hsc_gene_3047.t1
|
— | — |
P30622.2 CAP-Gly domain-containing linker protein 1 [Homo sapiens]
|
KAI3416053.1 CAP-GLY domain-containing linker protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.948|GO:0110165_0.942|GO:0005622_0.913|GO:0043226_0.819|GO:0043229_0.774|GO:0008150_0.704|GO:0016020_0.680|GO:0009987_0.624|GO:0005737_0.583|GO:0043228_0.563|GO:0043232_0.563|GO:0003674_0.560|GO:0005488_0.558|GO:0005515_0.529|GO:0043227_0.507
|
IPR000938+25-88_25-89_42-73_42-84_134-199_147-196_160-194+|IPR036859+4-97_4-118_134-207_150-217+
|
SM01052+25-89_134-199+
|
PF01302+25-88_147-196+CAP-Gly_domain
|
— |
PTHR18916+17-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;347-788
|
1.000
|
10-346
|
2cp5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
88154.140
|
5.804
|
-6.000
|
30.711
|
6.980
|
57.107
|
42.893
|
15.355
|
15.355
|
48.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1215.193
|
1562.111
|
1203.255
|
1187.922
|
1289.240
|
1077.175
|
1582.667
|
1398.442
|
1674.175
|
573.031
|
1044.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.606
|
-0.532
|
— | — |
-0.245
|
0.565
|
0.271
|
0.321
|
— | — | — | — | — |
No JSON data available for plots.