SCN Proteipedia

Hg_chrom8_TN10mRNA_15438

Organism: Heterodera glycines Gene Locus: chr8:4539675-4540682 Feature type: polypeptide

Protein Sequence

Length: 189

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.861	1.107	1.154	0.0	1.323	2.171	0.315	1.323	0.588	1.216	1.443	1.245	0.735	1.119	1.08	0.605	0.607	1.042	3.256	1.089	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14581	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.055	0.965	0.008	0.092	0.010	0.017	0.013	0.005	0.047	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011894	1.000	1.000	Hsc_gene_3046.t1	Hsc_gene_3046.t1	—	Q24251.2 ATP synthase subunit d, mitochondrial [Drosophila melanogaster]	EFO97204.1 CRE-ATP-5 protein [Caenorhabditis remanei]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000276\|GO:0015078\|GO:0015986	GO:0008150_0.923\|GO:0005575_0.899\|GO:0110165_0.894\|GO:0005622_0.872\|GO:0009987_0.864\|GO:0005737_0.826\|GO:0043226_0.824\|GO:0065007_0.813\|GO:0050789_0.807\|GO:0016020_0.806\|GO:0043229_0.805\|GO:0008152_0.803\|GO:0044238_0.787\|GO:0044237_0.778\|GO:0050794_0.776\|GO:0043227_0.764\|GO:0050896_0.763\|GO:0051716_0.748\|GO:0043231_0.744\|GO:0006139_0.737\|GO:0032501_0.737\|GO:0006950_0.721\|GO:0048519_0.720\|GO:0051179_0.714\|GO:0023052_0.713\|GO:0007154_0.711\|GO:0048523_0.711\|GO:0051234_0.706\|GO:0006810_0.703\|GO:0007165_0.703\|GO:0044281_0.698\|GO:0048583_0.696\|GO:0006793_0.695\|GO:0006796_0.695\|GO:0010646_0.692\|GO:0023051_0.692\|GO:0065008_0.692\|GO:1901135_0.692\|GO:0009966_0.691\|GO:0035556_0.687\|GO:0019637_0.685\|GO:1902531_0.684\|GO:0055086_0.681\|GO:0141124_0.681\|GO:0006753_0.680\|GO:0009968_0.680\|GO:0010648_0.680\|GO:0023057_0.680\|GO:0048585_0.680\|GO:0006979_0.679\|GO:0009117_0.678\|GO:0000165_0.676\|GO:0043408_0.676\|GO:0070371_0.675\|GO:0072521_0.675\|GO:0006163_0.674\|GO:0006811_0.674\|GO:0055085_0.674\|GO:0070372_0.674\|GO:1902532_0.674\|GO:0008340_0.670\|GO:0009141_0.670\|GO:0009144_0.670\|GO:0009150_0.670\|GO:0009199_0.670\|GO:0009205_0.670\|GO:0009259_0.670\|GO:0019693_0.670\|GO:0031929_0.670\|GO:0032006_0.670\|GO:0032007_0.670\|GO:0034220_0.670\|GO:0042391_0.670\|GO:0043409_0.670\|GO:0046034_0.670\|GO:0051881_0.670\|GO:0070373_0.670\|GO:0005739_0.575	IPR008689+1-152_5-156+\|IPR036228+4-130_7-111+	—	PF05873+5-156+ATP_synthase_D_chain,_mitochondrial_(ATP5H)	—	PTHR12700+1-152+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-189	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.561	22391.380	8.360	3.500	31.746	13.228	52.910	47.090	17.460	14.286	41.799

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	5498.237	1126.511	4034.663	4537.263	5777.950	5496.874	3546.552	4840.120	9262.739	6097.758	7454.179

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.612	1.873	0.278	0.317	—	-0.621	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser