SCN Proteipedia

Hg_chrom8_TN10mRNA_15442

Organism: Heterodera glycines Gene Locus: chr8:4551477-4553395 Feature type: polypeptide

Protein Sequence

Length: 456

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.841	0.918	0.837	0.529	1.023	1.856	0.705	1.864	0.926	1.126	0.897	1.806	1.645	1.223	1.432	0.689	0.575	0.731	0.506	1.483	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14585	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.966

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.818	0.110	0.012	0.391	0.092	0.108	0.123	0.003	0.057	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011897	1.000	1.000	Hsc_gene_3042.t1	Hsc_gene_3042.t1	—	A0A0R4IXF6.1 Histone acetyltransferase KAT2A [Danio rerio]	KAI3416047.1 PCAF (P300/CBP-associated factor) N-terminal domain [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004402\|GO:0005515\|GO:0016747	GO:0008150_0.941\|GO:0009987_0.893\|GO:0003674_0.848\|GO:0008152_0.784\|GO:0005575_0.766\|GO:0110165_0.761\|GO:0065007_0.740\|GO:0044237_0.739\|GO:0009058_0.725\|GO:0043170_0.725\|GO:0050789_0.712\|GO:0005622_0.709\|GO:0044249_0.704\|GO:0050794_0.699\|GO:0009059_0.690\|GO:0071840_0.681\|GO:0010467_0.675\|GO:0016020_0.674\|GO:0016043_0.673\|GO:0043226_0.664\|GO:0043229_0.648\|GO:0044238_0.643\|GO:0003824_0.639\|GO:0019222_0.635\|GO:0031323_0.631\|GO:0060255_0.628\|GO:0009889_0.616\|GO:0010556_0.616\|GO:0031326_0.616\|GO:0043227_0.616\|GO:0005488_0.615\|GO:0010468_0.612\|GO:0043231_0.600\|GO:0006325_0.587\|GO:0006139_0.574\|GO:0006338_0.574\|GO:0016740_0.563\|GO:0090304_0.562\|GO:0140096_0.549\|GO:0034654_0.548\|GO:0016070_0.538\|GO:0141187_0.537\|GO:0032774_0.535\|GO:0048518_0.521\|GO:0006351_0.520\|GO:0080090_0.509\|GO:0048522_0.508\|GO:0005634_0.504	IPR000182+105-253_127-224+\|IPR001487+323-431_335-413_342-412_345-358_359-375_375-393_393-412+\|IPR016181+112-254+\|IPR018359+347-404+\|IPR036427+309-437_321-431+\|IPR037800+62-432+	SM00297+323-431+	PF00439+335-413+Bromodomain\|PF00583+127-224+Acetyltransferase_(GNAT)_family	—	PTHR45750+62-432+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-68;449-456	1.000	69-448	8h6d_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.786	52833.310	9.197	18.500	27.412	15.351	46.930	53.070	16.667	10.746	42.763

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey60	797.964	595.048	563.848	695.423	899.221	878.966	831.426	755.923	256.864	1340.997	876.369

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.308	—	0.412	0.339	—	—	-0.323	0.280	-2.493	1.615	—	—	—

No JSON data available for plots.

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