Hg_chrom8_TN10mRNA_15444
Organism: Heterodera glycines Gene Locus: chr8:4555861-4557765 Feature type: polypeptideProtein Sequence
Length: 438
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.062 | 0.872 | 0.551 | 1.065 | 1.054 | 1.223 | 1.484 | 1.421 | 1.45 | 0.796 | 0.537 | 1.015 | 0.746 | 1.118 | 0.815 | 0.936 | 1.176 | 0.878 | 0.739 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14587
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRLQEVGAEIGVTTRRKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.517
|
0.363
|
0.037
|
0.756
|
0.104
|
0.176
|
0.077
|
0.046
|
0.074
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000924
|
4.000
|
2.000
|
Hsc_gene_3019.t1;Hsc_gene_3048.t1
|
Hsc_gene_3019.t1;Hsc_gene_3020.t1;Hsc_gene_3048.t1;Hsc_gene_6775.t1
|
— |
A8X7H5.2 Adenylosuccinate synthetase [Caenorhabditis briggsae]
|
KAI3416054.1 Adenylosuccinate synthetase [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004019|GO:0005525|GO:0006164
|
GO:0005575_0.791|GO:0110165_0.778|GO:0008150_0.704|GO:0005622_0.659|GO:0003674_0.650|GO:0009987_0.636|GO:0005737_0.634|GO:0003824_0.551|GO:0008152_0.511
|
IPR001114+1-438_4-432_5-432_6-432_8-431_8-432+|IPR018220+13-20+|IPR027417+5-433+|IPR033128+136-147+|IPR042109+9-268+|IPR042110+104-203+|IPR042111+269-436+
|
SM00788+6-432+
|
PF00709+8-431+Adenylosuccinate_synthetase
|
G3DSA:1.10.300.10:FF:000001+104-201+Adenylosuccinate_synthetase|G3DSA:3.90.170.10:FF:000001+269-435+Adenylosuccinate_synthetase
|
PTHR11846+4-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-438
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
48144.940
|
7.114
|
4.500
|
24.886
|
10.274
|
44.977
|
55.023
|
13.699
|
11.187
|
50.457
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
31.713
|
7.515
|
23.160
|
12.198
|
18.203
|
15.681
|
27.569
|
44.643
|
5.034
|
79.108
|
47.362
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.390
|
— |
-0.812
|
— | — |
0.826
|
1.400
|
-0.551
|
-4.082
|
— | — | — | — |
No JSON data available for plots.