Hg_chrom8_TN10mRNA_15445
Organism: Heterodera glycines Gene Locus: chr8:4561294-4563428 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 0.72 | 1.407 | 0.32 | 0.877 | 1.191 | 1.032 | 2.322 | 1.376 | 0.92 | 0.563 | 1.093 | 1.29 | 0.655 | 1.011 | 1.106 | 1.218 | 1.173 | 1.191 | 0.728 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.610
|
0.083
|
0.009
|
0.550
|
0.140
|
0.287
|
0.066
|
0.069
|
0.098
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011899
|
1.000
|
1.000
|
Hsc_gene_3040.t1
|
Hsc_gene_3040.t1
|
— |
A8QBF3.1 Eukaryotic translation initiation factor 3 subunit I [Brugia malayi]
|
KAF7639989.1 Eukaryotic translation initiation factor 3 subunit I [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.841|GO:0005575_0.790|GO:0110165_0.729|GO:0009987_0.661|GO:0005622_0.643|GO:0005737_0.562|GO:0008152_0.519
|
IPR001680+1-38_6-37_6-47_41-80_42-80_48-84_132-170_175-213_183-211_216-254_271-310_276-308_278-312+|IPR015943+1-323+|IPR019775+67-81+|IPR036322+5-308+
|
SM00320+1-38_41-80_132-170_175-213_216-254_271-310+
|
PF00400+6-37_42-80_183-211_276-308+WD_domain,_G-beta_repeat
|
— |
PTHR19877+1-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-323
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
35780.970
|
5.656
|
-6.500
|
26.316
|
13.313
|
49.226
|
50.774
|
13.313
|
13.003
|
53.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
2364.376
|
1111.427
|
1418.203
|
2488.541
|
2813.276
|
2492.357
|
3923.432
|
1566.638
|
1520.018
|
3273.927
|
2522.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.122
|
1.026
|
0.920
|
0.145
|
— |
0.665
|
-0.775
|
1.468
|
— | — | — | — | — |
No JSON data available for plots.