Hg_chrom8_TN10mRNA_15446
Organism: Heterodera glycines Gene Locus: chr8:4563523-4566364 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.856 | 1.082 | 0.881 | 0.869 | 1.001 | 0.795 | 0.323 | 1.26 | 1.292 | 1.912 | 0.94 | 1.026 | 1.938 | 0.745 | 1.503 | 0.969 | 0.826 | 0.675 | 0.894 | 0.798 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.780
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KAKKRKK
|
51-72
|
0.907
|
— | — | — | — |
0.000
|
— | — |
0.901
|
0.070
|
0.007
|
0.146
|
0.008
|
0.043
|
0.034
|
0.017
|
0.019
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011900
|
1.000
|
1.000
|
Hsc_gene_3039.t1
|
Hsc_gene_3039.t1
|
— | — |
KAF7639992.1 NopRA1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.918|GO:0110165_0.912|GO:0016020_0.860|GO:0003674_0.847|GO:0005622_0.841|GO:0043226_0.796|GO:0043229_0.793|GO:0043227_0.763|GO:0005488_0.760|GO:0043231_0.751|GO:0097159_0.676|GO:0003676_0.663|GO:0003723_0.657|GO:0043228_0.603|GO:0005634_0.601|GO:0043232_0.601|GO:0031974_0.568|GO:0043233_0.568|GO:0070013_0.568|GO:0031981_0.565|GO:0005730_0.547|GO:0001650_0.540
|
IPR016024+188-432+|IPR032436+211-404+|IPR039844+62-439+
|
— |
PF16201+211-404+Nucleolar_pre-ribosomal-associated_protein_1
|
— |
PTHR13500+62-439+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
59781.550
|
9.183
|
20.500
|
26.938
|
13.372
|
46.512
|
53.488
|
16.085
|
10.853
|
42.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
978.396
|
859.146
|
819.377
|
1199.153
|
1105.341
|
786.075
|
1050.359
|
609.139
|
405.577
|
1565.581
|
1068.436
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.299
|
0.344
|
0.659
|
-0.149
|
-0.477
|
0.427
|
-0.471
|
0.927
|
— | — | — | — | — |
No JSON data available for plots.