Hg_chrom8_TN10mRNA_15447
Organism: Heterodera glycines Gene Locus: chr8:4568438-4574023 Feature type: polypeptideProtein Sequence
Length: 753
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.127 | 1.174 | 0.41 | 0.321 | 0.974 | 1.703 | 0.885 | 0.996 | 0.679 | 0.79 | 0.644 | 1.172 | 0.627 | 2.196 | 1.138 | 1.651 | 1.263 | 0.584 | 1.532 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PKPS
|
— | — |
7-47
|
1.000
|
— | — |
0.000
|
— | — |
0.102
|
0.108
|
0.030
|
0.200
|
0.286
|
0.090
|
0.293
|
0.015
|
0.373
|
0.701
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000442
|
1.000
|
7.000
|
Hsc_gene_3037.t1;Hsc_gene_3037.t2;Hsc_gene_3037.t3;Hsc_gene_3037.t4;Hsc_gene_3037.t5;Hsc_gene_3037.t6;Hsc_gene_3037.t7
|
Hsc_gene_3037.t4
|
— | — |
KAI3416040.1 hypothetical protein GPALN_005594 [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21;125-753
|
1.000
|
22-124
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
80549.710
|
9.868
|
20.500
|
19.920
|
6.906
|
50.863
|
49.137
|
11.819
|
8.101
|
59.894
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
491.576
|
262.625
|
138.085
|
275.806
|
202.329
|
256.933
|
359.582
|
87.005
|
129.528
|
1460.110
|
889.861
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.159
|
— |
1.109
|
-0.479
|
0.360
|
0.495
|
-1.677
|
2.193
|
— | — | — | — | — |
No JSON data available for plots.