Hg_chrom8_TN10mRNA_15449
Organism: Heterodera glycines Gene Locus: chr8:4576852-4578019 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 0.462 | 0.783 | 1.028 | 0.717 | 1.019 | 2.365 | 0.497 | 0.368 | 0.268 | 0.552 | 1.169 | 0.46 | 4.585 | 0.811 | 0.71 | 0.706 | 0.853 | 0.0 | 0.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
PGRPGKPGKPGAPG
|
6-29
|
0.902
|
— | — | — | — |
0.000
|
— | — |
0.035
|
0.053
|
0.014
|
0.105
|
0.370
|
0.273
|
0.280
|
0.004
|
0.682
|
0.323
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002484
|
2.000
|
2.000
|
Hsc_gene_3034.t1;Hsc_gene_3035.t1
|
Hsc_gene_3034.t1;Hsc_gene_3035.t1
|
F23H12.4b
|
P08124.2 Cuticle collagen 1 [Caenorhabditis elegans]
|
KAI1703518.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.940|GO:0032501_0.881|GO:0032502_0.867|GO:0048856_0.867|GO:0007275_0.845|GO:0005575_0.751|GO:0110165_0.749|GO:0042335_0.673|GO:0040002_0.670|GO:0071944_0.619|GO:0030312_0.613|GO:0031012_0.578|GO:0062023_0.578|GO:0042303_0.545|GO:0018996_0.531|GO:0042338_0.531
|
IPR002486+13-65_16-64+|IPR008160+154-212_220-277+|IPR050632+19-286+
|
SM01088+13-65+
|
PF01391+154-212_220-277+Collagen_triple_helix_repeat_(20_copies)|PF01484+16-64+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+19-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
56-302
|
1.000
|
1-55
|
9han_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
29878.370
|
5.743
|
-1.500
|
17.219
|
4.967
|
32.450
|
67.550
|
8.609
|
8.609
|
73.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
267.411
|
211.013
|
3.591
|
5.849
|
787.968
|
1046.771
|
125.545
|
813.132
|
0.000
|
47.224
|
26.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.113
|
-5.309
|
— |
7.040
|
0.425
|
-3.050
|
— |
-2.547
|
-6.342
|
— |
4.579
|
— | — |
No JSON data available for plots.