Hg_chrom8_TN10mRNA_15450
Organism: Heterodera glycines Gene Locus: chr8:4580868-4582335 Feature type: polypeptideProtein Sequence
Length: 326
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 0.499 | 0.725 | 1.058 | 0.818 | 0.944 | 2.228 | 0.613 | 0.409 | 0.207 | 0.558 | 1.263 | 0.426 | 4.306 | 0.939 | 0.613 | 0.754 | 0.883 | 0.0 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14593
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
PGRPGKPGKPGAPG
|
30-53
|
0.902
|
— | — | — | — |
0.000
|
— | — |
0.035
|
0.051
|
0.015
|
0.103
|
0.375
|
0.270
|
0.288
|
0.005
|
0.686
|
0.316
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002484
|
2.000
|
2.000
|
Hsc_gene_3034.t1;Hsc_gene_3035.t1
|
Hsc_gene_3034.t1;Hsc_gene_3035.t1
|
F23H12.4b
|
P08124.2 Cuticle collagen 1 [Caenorhabditis elegans]
|
KAI1703518.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.939|GO:0032501_0.879|GO:0032502_0.867|GO:0048856_0.867|GO:0007275_0.847|GO:0005575_0.746|GO:0110165_0.743|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.623|GO:0030312_0.618|GO:0031012_0.563|GO:0062023_0.563|GO:0042303_0.543|GO:0018996_0.531|GO:0042338_0.531
|
IPR002486+37-89_40-88+|IPR008160+178-235_246-303+|IPR050632+42-310+
|
SM01088+37-89+
|
PF01391+178-235_246-303+Collagen_triple_helix_repeat_(20_copies)|PF01484+40-88+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+42-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-326
|
1.000
|
1-79
|
9han_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
32384.230
|
6.468
|
0.000
|
18.405
|
4.908
|
33.129
|
66.871
|
9.509
|
8.896
|
72.699
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
5523.090
|
1889.163
|
17.663
|
19.996
|
7311.051
|
43202.255
|
105.512
|
9580.701
|
12.439
|
856.811
|
494.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.971
|
-6.700
|
— |
8.482
|
2.579
|
-8.667
|
-2.292
|
-6.356
|
-6.229
|
— |
3.747
|
— | — |
No JSON data available for plots.