Hg_chrom8_TN10mRNA_15453
Organism: Heterodera glycines Gene Locus: chr8:4591061-4594732 Feature type: polypeptideProtein Sequence
Length: 669
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.904 | 0.897 | 0.309 | 0.947 | 0.805 | 1.121 | 0.897 | 1.163 | 0.869 | 0.702 | 2.022 | 1.619 | 1.179 | 1.22 | 0.94 | 0.833 | 1.042 | 1.035 | 0.879 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
39-99
|
0.929
|
— | — | — | — |
0.001
|
— | — |
0.110
|
0.045
|
0.010
|
0.193
|
0.484
|
0.727
|
0.525
|
0.016
|
0.674
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011904
|
1.000
|
1.000
|
Hsc_gene_3030.t2
|
Hsc_gene_3030.t1;Hsc_gene_3030.t2
|
— |
P0DPU3.1 Scoloptoxin SSD14 [Scolopendra dehaani]
|
KAI1717614.1 gamma-glutamyltranspeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006751|GO:0036374
|
GO:0005575_0.849|GO:0110165_0.842|GO:0008150_0.732|GO:0016020_0.703|GO:0003674_0.654|GO:0009987_0.604|GO:0003824_0.547|GO:0008152_0.532
|
IPR000101+73-660_476-500+|IPR029055+118-660+|IPR043137+470-668+|IPR043138+356-465+
|
— |
PF01019+137-661+Gamma-glutamyltranspeptidase
|
G3DSA:1.10.246.130:FF:000005+354-466+Gamma-glutamyltranspeptidase_1,_putative|G3DSA:3.60.20.40:FF:000006+471-669+Protein_CBG05566
|
PTHR11686+73-660+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;667-669
|
1.000
|
10-666
|
4gdx_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
73413.670
|
7.501
|
6.000
|
23.019
|
11.958
|
41.704
|
58.296
|
12.407
|
10.613
|
53.513
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1406.825
|
282.885
|
286.665
|
350.097
|
2235.740
|
6355.798
|
423.573
|
631.173
|
297.492
|
1969.517
|
1252.935
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.397
|
2.644
|
1.523
|
-3.900
|
-3.446
|
— |
-2.846
|
— | — | — | — |
No JSON data available for plots.