Hg_chrom8_TN10mRNA_15454
Organism: Heterodera glycines Gene Locus: chr8:4596580-4600573 Feature type: polypeptideProtein Sequence
Length: 598
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.992 | 1.089 | 0.76 | 0.692 | 1.366 | 1.286 | 0.717 | 2.09 | 0.929 | 1.401 | 0.76 | 1.082 | 1.347 | 0.74 | 1.604 | 0.764 | 0.631 | 0.937 | 1.672 | 0.492 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14597
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRTRRSGLFPSYLAREKWR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.098
|
0.088
|
0.002
|
0.222
|
0.548
|
0.264
|
0.898
|
0.013
|
0.162
|
0.224
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011905
|
1.000
|
1.000
|
Hsc_gene_3029.t1
|
Hsc_gene_3029.t1
|
— |
G5EFE7.1 Alpha-(1,6)-fucosyltransferase [Caenorhabditis elegans]
|
KAI1714999.1 variant SH3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0003674_0.870|GO:0003824_0.737|GO:0008150_0.702|GO:0016740_0.690|GO:0016757_0.657|GO:0009987_0.647|GO:0016758_0.533|GO:0008152_0.529|GO:0008417_0.527|GO:0046921_0.527|GO:0044238_0.512|GO:0044237_0.505|GO:0043170_0.504
|
IPR001452+519-580_522-579_529-573+|IPR027350+214-510+|IPR035653+532-577+|IPR036028+526-574+|IPR045573+24-515+
|
SM00326+522-579+
|
PF14604+529-573+Variant_SH3_domain|PF19745+24-515+Alpha-(1,6)-fucosyltransferase_N-_and_catalytic_domains
|
G3DSA:2.30.30.40:FF:000070+521-578+Alpha-(1,6)-fucosyltransferase
|
PTHR13132+28-518+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
53-124
|
2.000
|
1-52;125-598
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
68413.980
|
8.001
|
15.500
|
29.431
|
12.876
|
48.328
|
51.672
|
17.057
|
12.375
|
44.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
720.340
|
2094.970
|
1663.268
|
686.721
|
401.861
|
542.520
|
209.478
|
838.958
|
91.644
|
668.587
|
421.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.563
|
-1.746
|
-1.167
|
-0.805
|
0.448
|
-1.363
|
0.527
|
-1.861
|
— | — | — | — | — |
No JSON data available for plots.