Hg_chrom8_TN10mRNA_15455
Organism: Heterodera glycines Gene Locus: chr8:4601857-4603706 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.154 | 0.684 | 1.003 | 0.127 | 2.083 | 1.885 | 0.35 | 0.919 | 1.144 | 0.894 | 1.058 | 1.081 | 0.817 | 1.061 | 1.05 | 1.155 | 1.145 | 0.836 | 0.566 | 0.324 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14598
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.876
|
0.108
|
0.027
|
0.456
|
0.052
|
0.139
|
0.162
|
0.008
|
0.034
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011906
|
1.000
|
1.000
|
Hsc_gene_3028.t1
|
Hsc_gene_3027.t1;Hsc_gene_3028.t1
|
— |
Q5ZMU6.1 Serine/threonine-protein phosphatase 4 regulatory subunit 2 [Gallus gallus]
|
KAI1724201.1 PPP4R2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019888|GO:0030289
|
GO:0008150_0.928|GO:0005575_0.925|GO:0110165_0.919|GO:0009987_0.888|GO:0005622_0.874|GO:0043226_0.803|GO:0043229_0.784|GO:0032991_0.697|GO:0016020_0.669|GO:1902494_0.585|GO:0065007_0.581|GO:0043227_0.569|GO:0050789_0.564|GO:0050794_0.546|GO:0050896_0.544|GO:0043231_0.542|GO:0008287_0.540|GO:0030289_0.540|GO:1903293_0.540|GO:0051716_0.524
|
IPR015267+45-265_63-266+
|
— |
PF09184+63-266+PPP4R2
|
— |
PTHR16487+45-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;176-272
|
1.000
|
61-175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
30492.920
|
4.584
|
-13.500
|
31.985
|
6.618
|
57.353
|
42.647
|
13.971
|
18.015
|
47.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
700.659
|
773.824
|
538.865
|
440.201
|
560.678
|
515.996
|
921.952
|
577.268
|
1077.573
|
633.909
|
824.050
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.752
|
-0.951
|
-0.182
|
0.317
|
— |
0.849
|
— |
0.821
|
— | — | — | — | — |
No JSON data available for plots.