Hg_chrom8_TN10mRNA_15460
Organism: Heterodera glycines Gene Locus: chr8:4616004-4620787 Feature type: polypeptideProtein Sequence
Length: 860
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.5 | 1.812 | 0.761 | 0.521 | 1.453 | 1.55 | 0.554 | 1.57 | 0.827 | 1.194 | 1.022 | 1.3 | 0.937 | 0.984 | 1.281 | 1.611 | 0.801 | 0.687 | 0.805 | 0.479 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14602
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
39-59
|
0.985
|
— | — |
0.000
|
— | — |
0.550
|
0.145
|
0.007
|
0.520
|
0.128
|
0.256
|
0.159
|
0.024
|
0.150
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002485
|
1.000
|
3.000
|
Hsc_gene_3022.t1;Hsc_gene_3022.t2;Hsc_gene_3022.t3
|
Hsc_gene_3022.t1;Hsc_gene_3022.t2;Hsc_gene_3022.t3
|
— | — |
KAI3416026.1 hypothetical protein GPALN_005582 [Globodera pallida]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+264-285+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-647
|
1.000
|
648-860
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
97751.130
|
7.717
|
14.500
|
29.070
|
9.186
|
59.070
|
40.930
|
16.163
|
12.907
|
48.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2529.070
|
2695.210
|
1802.300
|
2011.713
|
2493.331
|
2807.523
|
3116.459
|
2347.293
|
2901.273
|
2411.043
|
2621.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.810
|
-0.559
|
0.268
|
0.278
|
0.186
|
0.161
|
-0.363
|
0.551
|
— | — | — | — | — |
No JSON data available for plots.