Hg_chrom8_TN10mRNA_15464
Organism: Heterodera glycines Gene Locus: chr8:4630822-4632107 Feature type: polypeptideProtein Sequence
Length: 155
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 0.75 | 0.938 | 0.445 | 1.075 | 0.993 | 0.922 | 1.29 | 1.29 | 0.959 | 1.271 | 1.898 | 1.075 | 0.993 | 0.922 | 0.737 | 0.423 | 1.369 | 1.985 | 0.759 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.549
|
0.099
|
0.678
|
0.120
|
0.093
|
0.096
|
0.197
|
0.160
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011909
|
1.000
|
1.000
|
Hsc_gene_6774.t1
|
Hsc_gene_6774.t1
|
— |
P48817.1 Nucleoside diphosphate kinase [Brugia malayi]
|
KAH7728905.1 Protein NDK-1 [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004550|GO:0006183|GO:0006228|GO:0006241
|
GO:0005575_0.821|GO:0110165_0.803|GO:0008150_0.733|GO:0005622_0.702|GO:0003674_0.685|GO:0016020_0.634|GO:0005737_0.625|GO:0043226_0.599|GO:0043229_0.586|GO:0043227_0.571|GO:0009987_0.565|GO:0043231_0.563|GO:0003824_0.525
|
IPR001564+7-142_10-32_54-73_74-91_95-111_118-137+|IPR023005+118-126+|IPR034907+7-144_8-141+|IPR036850+2-155_7-155+
|
SM00562+7-144+
|
PF00334+8-141+Nucleoside_diphosphate_kinase
|
G3DSA:3.30.70.141:FF:000002+4-155+Nucleoside_diphosphate_kinase
|
PTHR11349+5-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-155
|
7kpf_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
17300.010
|
8.482
|
4.000
|
27.097
|
11.613
|
41.935
|
58.065
|
15.484
|
11.613
|
49.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
7060.682
|
1297.879
|
3090.124
|
9355.784
|
10671.049
|
8088.919
|
6323.881
|
3470.893
|
4200.689
|
11878.017
|
8587.734
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.022
|
2.713
|
1.707
|
0.158
|
-0.385
|
-0.345
|
-1.327
|
1.009
|
-1.609
|
— | — | — | — |
No JSON data available for plots.