Hg_chrom8_TN10mRNA_15465
Organism: Heterodera glycines Gene Locus: chr8:4632155-4633218 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.292 | 0.699 | 0.884 | 1.068 | 0.548 | 0.661 | 0.641 | 0.95 | 1.617 | 0.842 | 1.006 | 1.425 | 1.068 | 1.395 | 1.343 | 0.56 | 1.554 | 0.986 | 0.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14607
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
19-59
|
0.991
|
16-46
|
0.997
|
— | — |
0.000
|
— | — |
0.060
|
0.913
|
0.322
|
0.221
|
0.050
|
0.054
|
0.065
|
0.079
|
0.062
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011910
|
1.000
|
1.000
|
Hsc_gene_6773.t1
|
Hsc_gene_6773.t1
|
— |
Q20970.1 Methionine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]
|
AFY06992.1 methionyl tRNA synthetase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000049
|
GO:0005575_0.782|GO:0008150_0.779|GO:0110165_0.771|GO:0009987_0.722|GO:0005622_0.630|GO:0003674_0.593|GO:0005737_0.576|GO:0005488_0.542|GO:0005515_0.504
|
IPR002547+70-172_76-164+|IPR012340+69-234_70-212+|IPR051270+61-233+
|
— |
PF01588+76-164+Putative_tRNA_binding_domain
|
— |
PTHR11586+61-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-234
|
8ong_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
25960.120
|
8.757
|
6.500
|
23.932
|
8.547
|
44.444
|
55.556
|
13.675
|
10.256
|
52.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
596.663
|
342.350
|
458.719
|
692.006
|
785.996
|
521.377
|
586.820
|
389.745
|
450.693
|
856.003
|
682.298
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.191
|
0.878
|
0.703
|
0.152
|
-0.578
|
0.181
|
-0.525
|
0.733
|
— | — | — | — | — |
No JSON data available for plots.