Hg_chrom8_TN10mRNA_15468
Organism: Heterodera glycines Gene Locus: chr8:4639341-4641431 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.179 | 0.911 | 0.251 | 0.636 | 0.499 | 0.827 | 0.576 | 0.806 | 0.768 | 1.495 | 0.943 | 1.626 | 1.92 | 1.108 | 1.129 | 1.35 | 0.793 | 1.396 | 1.595 | 0.813 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14610
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
REKLAKLVKRKQKQRKDNLRDKNEQKAEGRE
|
— | — |
10-32
|
0.963
|
— | — |
0.000
|
— | — |
0.107
|
0.093
|
0.010
|
0.110
|
0.188
|
0.181
|
0.112
|
0.003
|
0.865
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011913
|
1.000
|
1.000
|
Hsc_gene_6770.t1
|
Hsc_gene_6770.t1
|
— |
Q09638.3 Neuropeptide receptor 15 [Caenorhabditis elegans]
|
KAI1723085.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.876|GO:0009987_0.789|GO:0005575_0.771|GO:0110165_0.771|GO:0065007_0.716|GO:0003674_0.684|GO:0050789_0.672|GO:0050896_0.669|GO:0016020_0.649|GO:0050794_0.644|GO:0051716_0.635|GO:0023052_0.618|GO:0007154_0.614|GO:0007165_0.593|GO:0005886_0.557|GO:0071944_0.557|GO:0007186_0.527|GO:0038023_0.524|GO:0060089_0.524|GO:0005488_0.520
|
IPR000276+32-56_48-370_66-87_113-135_149-170_201-224_313-337_352-378+|IPR017452+47-370+
|
— |
PF00001+48-370+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+31-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-434
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
48279.820
|
10.755
|
35.500
|
17.742
|
13.364
|
39.171
|
60.829
|
13.364
|
4.378
|
51.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
989.385
|
641.662
|
388.453
|
98.807
|
138.347
|
1067.528
|
202.345
|
1079.553
|
88.892
|
2905.631
|
1698.457
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.954
|
-2.836
|
-1.865
|
0.452
|
2.963
|
-2.391
|
— |
-2.277
|
— | — | — | — | — |
No JSON data available for plots.