Hg_chrom8_TN10mRNA_15470
Organism: Heterodera glycines Gene Locus: chr8:4650652-4655964 Feature type: polypeptideProtein Sequence
Length: 727
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 0.736 | 0.75 | 0.711 | 0.596 | 1.587 | 0.884 | 1.1 | 1.192 | 1.152 | 0.771 | 1.456 | 1.376 | 0.714 | 1.572 | 1.376 | 0.676 | 1.125 | 1.376 | 0.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14612
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — |
7-47
|
1.000
|
— | — |
0.000
|
— | — |
0.073
|
0.105
|
0.006
|
0.108
|
0.386
|
0.487
|
0.276
|
0.003
|
0.756
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002486
|
1.000
|
3.000
|
Hsc_gene_6768.t1;Hsc_gene_6768.t2;Hsc_gene_6768.t3
|
Hsc_gene_6767.t1;Hsc_gene_6768.t1;Hsc_gene_6768.t2;Hsc_gene_6768.t3
|
— |
P70057.2 Potassium voltage-gated channel subfamily KQT member 1 [Xenopus laevis]
|
KAI1727253.1 ion transport protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005249|GO:0006811|GO:0006813|GO:0008076|GO:0016020|GO:0055085
|
GO:0008150_0.970|GO:0009987_0.942|GO:0051179_0.894|GO:0006810_0.889|GO:0051234_0.889|GO:0005575_0.887|GO:0110165_0.881|GO:0003674_0.876|GO:0016020_0.856|GO:0055085_0.841|GO:0071944_0.838|GO:0005886_0.831|GO:0006811_0.806|GO:0034220_0.800|GO:0005215_0.782|GO:0022857_0.782|GO:0015075_0.754|GO:0098660_0.753|GO:0005216_0.749|GO:0015267_0.749|GO:0022803_0.749|GO:0006812_0.745|GO:0030001_0.745|GO:0098655_0.739|GO:0098662_0.730|GO:0015318_0.718|GO:0008324_0.714|GO:0005261_0.700|GO:0022890_0.696|GO:0046873_0.696|GO:0006813_0.687|GO:0071805_0.683|GO:0022836_0.669|GO:0005267_0.658|GO:0015079_0.658|GO:0005244_0.628|GO:0022832_0.628|GO:0032501_0.587|GO:0065007_0.540|GO:0022843_0.533|GO:0005249_0.527|GO:0050789_0.510
|
IPR003937+42-674_161-180_181-200_243-262+|IPR005821+126-354+|IPR005827+554-571_621-640_641-661+|IPR013821+549-653+|IPR027359+90-238+
|
— |
PF00520+126-354+Ion_transport_protein|PF03520+549-653+KCNQ_voltage-gated_potassium_channel
|
G3DSA:1.10.287.70:FF:000113+120-349+Potassium_voltage-gated_channel_subfamily_KQT_member_1|G3DSA:1.20.120.350:FF:000017+91-238+potassium_voltage-gated_channel_subfamily_KQT_member_1
|
PTHR47735+42-674+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
441-485;600-645;726-727
|
3.000
|
1-440;486-599;646-725
|
9wd8_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
81110.300
|
10.359
|
45.000
|
22.696
|
11.279
|
45.805
|
54.195
|
14.993
|
7.703
|
49.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey60
|
452.749
|
196.222
|
888.111
|
542.948
|
146.425
|
66.492
|
154.382
|
363.208
|
936.513
|
394.221
|
626.632
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.948
|
1.331
|
-0.601
|
-1.922
|
-1.125
|
1.226
|
2.349
|
-1.093
|
— | — | — | — | — |
No JSON data available for plots.