SCN Proteipedia

Hg_chrom8_TN10mRNA_15471

Organism: Heterodera glycines Gene Locus: chr8:4662150-4665828 Feature type: polypeptide

Protein Sequence

Length: 354

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.755	1.051	1.233	0.974	1.365	1.014	0.504	1.13	1.318	1.107	1.198	1.828	1.569	0.38	0.922	0.888	1.065	0.942	0.652	1.08	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14613	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.272	0.183	0.024	0.509	0.079	0.333	0.517	0.021	0.692	0.100

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011915	1.000	1.000	Hsc_gene_6766.t1	Hsc_gene_6766.t1	C26C6.2	P51875.3 Guanine nucleotide-binding protein G(o) subunit alpha [Caenorhabditis elegans]	KAI3416013.1 Guanine nucleotide-binding protein G(o) subunit alpha [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525\|GO:0007165\|GO:0007186\|GO:0007188\|GO:0019001\|GO:0031683	GO:0005575_0.906\|GO:0110165_0.903\|GO:0008150_0.855\|GO:0071944_0.768\|GO:0016020_0.741\|GO:0005886_0.732\|GO:0009987_0.696\|GO:0050896_0.690\|GO:0065007_0.666\|GO:0005622_0.659\|GO:0003674_0.640\|GO:0050789_0.620\|GO:0050794_0.606\|GO:0051716_0.591\|GO:0007154_0.561\|GO:0023052_0.558\|GO:0005737_0.541\|GO:0007165_0.537	IPR001019+6-353_13-353_14-343_32-354_34-348_35-50_168-190_197-214_219-247_265-274+\|IPR001408+79-88_186-196_279-291_297-308_343-354+\|IPR011025+61-182_62-181+\|IPR027417+32-352_35-343+	SM00275+13-353+	PF00503+14-343+G-protein_alpha_subunit	G3DSA:1.10.400.10:FF:000001+62-181+Guanine_nucleotide-binding_protein_G(I)_subunit_alpha\|G3DSA:3.40.50.300:FF:002307+152-354+Guanine_nucleotide-binding_protein_G(k)_subunit_alpha\|G3DSA:3.40.50.300:FF:003559+1-71+Guanine_nucleotide-binding_protein_G(i)_subunit_alpha-1	PTHR10218+6-353+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3	1.000	4-354	9plo_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.675	40677.380	5.493	-5.000	29.661	12.429	50.847	49.153	14.689	14.972	45.763

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	greenyellow	1426.975	1303.439	3324.093	1330.344	640.177	1834.134	1816.334	3381.596	637.142	653.863	646.697

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.122	-0.108	-1.213	-1.087	1.533	—	0.780	-0.755	—	—	—	—	—

No JSON data available for plots.

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