SCN Proteipedia

Hg_chrom8_TN10mRNA_15473

Organism: Heterodera glycines Gene Locus: chr8:4669202-4679638 Feature type: polypeptide

Protein Sequence

Length: 1,736

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.817	0.978	0.964	0.536	1.094	1.004	0.651	1.382	1.011	1.191	0.637	1.559	1.344	0.886	1.387	1.267	1.162	1.03	0.886	0.83	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14614	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	0.985

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|endoplasmic_reticulum	—	KKPR	51-74	0.891	—	—	—	—	0.000	—	—	0.085	0.131	0.027	0.182	0.631	0.571	0.576	0.013	0.634	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002487	2.000	2.000	Hsc_gene_6764.t1;Hsc_gene_6764.t2	Hsc_gene_6764.t2;Hsc_gene_6765.t1	—	P98199.2 Phospholipid-transporting ATPase ID [Mus musculus]	KAI6200695.1 Phospholipid-transporting ATPase [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0000287\|GO:0005215\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0016887\|GO:0140326	GO:0008150_0.892\|GO:0005575_0.886\|GO:0110165_0.886\|GO:0009987_0.870\|GO:0005886_0.869\|GO:0016020_0.869\|GO:0071944_0.869\|GO:0065007_0.818\|GO:0051179_0.764\|GO:0006810_0.757\|GO:0051234_0.757\|GO:0043226_0.698\|GO:0005622_0.691\|GO:0003674_0.662\|GO:0043229_0.646\|GO:0065008_0.625\|GO:0043227_0.577\|GO:0071840_0.563\|GO:0016043_0.559\|GO:0033036_0.551\|GO:0005737_0.545\|GO:0005773_0.545\|GO:0043231_0.545\|GO:0005215_0.534\|GO:0012505_0.529	IPR001757+953-1062+\|IPR006539+47-771+\|IPR008250+131-277+\|IPR018303+444-450+\|IPR023214+703-787_854-1021+\|IPR023298+46-1257+\|IPR023299+438-702_449-702+\|IPR032630+1009-1257+\|IPR032631+34-99+\|IPR036412+437-1037+	—	PF13246+528-625+Cation_transport_ATPase_(P-type)\|PF16209+34-99+Phospholipid-translocating_ATPase_N-terminal\|PF16212+1009-1257+Phospholipid-translocating_P-type_ATPase_C-terminal	G3DSA:3.40.50.1000:FF:000001+439-451+Phospholipid-transporting_ATPase_IC\|G3DSA:3.40.50.1000:FF:000130+878-1021+Phospholipid-transporting_ATPase	PTHR24092+28-1269+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	767-927;1341-1736	2.000	1-766;928-1340	7py4_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.672	195297.210	6.824	9.000	25.634	11.578	49.712	50.288	13.767	11.866	50.922

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	grey	2073.016	1782.718	2767.489	1360.595	1192.505	4215.229	2460.701	2099.194	1981.608	1628.827	1780.019

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.404	-0.527	-0.914	-0.222	1.836	-0.766	-1.117	—	—	—	—	—	—

No JSON data available for plots.

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