Hg_chrom8_TN10mRNA_15475
Organism: Heterodera glycines Gene Locus: chr8:4693862-4694865 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.938 | 1.32 | 0.556 | 1.344 | 0.517 | 0.672 | 1.008 | 1.344 | 1.253 | 1.1 | 1.898 | 1.232 | 1.086 | 1.152 | 0.518 | 1.19 | 1.039 | 0.62 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14616
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.631
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.481
|
0.479
|
0.006
|
0.767
|
0.121
|
0.160
|
0.123
|
0.044
|
0.140
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001423
|
3.000
|
2.000
|
Hsc_gene_6743.t1;Hsc_gene_6743.t2
|
Hsc_gene_6743.t1;Hsc_gene_6743.t2
|
— |
Q8VZP1.1 (DL)-glycerol-3-phosphatase 2 [Arabidopsis thaliana]
|
KAI1714145.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.707|GO:0005575_0.639|GO:0110165_0.633|GO:0008150_0.585|GO:0003824_0.584|GO:0005622_0.562|GO:0005737_0.512
|
IPR006439+146-199+|IPR023198+19-91+|IPR023214+8-205+|IPR036412+5-212+|IPR041492+8-199+
|
— |
PF13419+8-199+Haloacid_dehalogenase-like_hydrolase
|
— |
PTHR18901+3-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-248
|
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
28021.200
|
5.435
|
-3.500
|
30.242
|
9.677
|
47.177
|
52.823
|
14.919
|
15.323
|
48.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
268.911
|
15.851
|
38.404
|
87.577
|
277.496
|
788.214
|
368.094
|
731.949
|
17.474
|
298.033
|
177.794
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.046
|
2.330
|
1.298
|
1.633
|
1.521
|
-1.086
|
— |
-0.843
|
— | — | — | — | — |
No JSON data available for plots.