Hg_chrom8_TN10mRNA_15479
Organism: Heterodera glycines Gene Locus: chr8:4711894-4714306 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.775 | 1.01 | 0.511 | 1.204 | 0.997 | 0.705 | 0.926 | 1.44 | 1.276 | 1.207 | 2.07 | 0.514 | 0.748 | 0.831 | 1.111 | 0.698 | 1.543 | 0.142 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14620
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.502
|
0.318
|
0.021
|
0.640
|
0.157
|
0.192
|
0.129
|
0.045
|
0.123
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004737
|
2.000
|
1.000
|
Hsc_gene_6746.t1
|
Hsc_gene_6746.t1
|
— |
P47208.1 T-complex protein 1 subunit delta [Caenorhabditis elegans]
|
KAI3415993.1 T-complex protein 1 subunit delta [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.840|GO:0110165_0.829|GO:0005622_0.782|GO:0005737_0.709|GO:0008150_0.583
|
IPR002194+49-61_70-86_98-106+|IPR002423+44-537+|IPR012717+24-538_25-538+|IPR017998+26-537_46-62_68-86_98-117_387-409_421-433+|IPR027409+220-392_225-382+|IPR027410+154-419_155-418+|IPR027413+26-538_41-536+|IPR053374+33-537+
|
— |
PF00118+44-537+TCP-1/cpn60_chaperonin_family
|
G3DSA:3.50.7.10:FF:000010+225-382+T-complex_protein_1_subunit_delta
|
PTHR11353+26-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-540
|
8sht_d
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
58394.690
|
6.660
|
1.000
|
26.667
|
5.000
|
45.926
|
54.074
|
13.889
|
12.778
|
52.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
4077.897
|
3159.416
|
2761.694
|
6509.239
|
6735.184
|
5245.055
|
4309.275
|
2729.520
|
2890.874
|
3879.126
|
3455.590
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.423
|
0.906
|
1.345
|
— |
-0.345
|
-0.274
|
-1.048
|
0.802
|
— | — | — | — | — |
No JSON data available for plots.