Hg_chrom8_TN10mRNA_15483
Organism: Heterodera glycines Gene Locus: chr8:4723124-4724461 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.089 | 0.486 | 1.153 | 1.003 | 1.286 | 0.398 | 1.171 | 0.372 | 0.768 | 0.405 | 1.771 | 2.694 | 1.93 | 1.092 | 2.15 | 0.658 | 0.76 | 0.515 | 0.393 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14624
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— |
47-88
|
0.886
|
79-113
|
0.999
|
— |
0.738
|
0.057
|
0.000
|
— |
0.871
|
0.124
|
0.012
|
0.328
|
0.044
|
0.057
|
0.083
|
0.006
|
0.026
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004740
|
1.000
|
2.000
|
Hsc_gene_6755.t1;Hsc_gene_6755.t2
|
Hsc_gene_6755.t1;Hsc_gene_6755.t2
|
— |
Q61467.2 Zinc finger protein ZIC 4 [Mus musculus]
|
KAF6041646.1 GLI3 [Bugula neritina]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000977|GO:0005634|GO:0006357
|
GO:0008150_0.874|GO:0005575_0.775|GO:0110165_0.775|GO:0009987_0.729|GO:0016020_0.715|GO:0065007_0.715|GO:0050789_0.711|GO:0050794_0.702|GO:0005622_0.696|GO:0043226_0.679|GO:0032501_0.674|GO:0043229_0.653|GO:0043227_0.645|GO:0032502_0.642|GO:0048856_0.626|GO:0043231_0.619|GO:0003674_0.600|GO:0008152_0.592|GO:0019222_0.592|GO:0031323_0.592|GO:0044237_0.592|GO:0043170_0.591|GO:0005488_0.589|GO:0060255_0.584|GO:0009058_0.573|GO:0009059_0.573|GO:0044249_0.573|GO:0010467_0.572|GO:0007275_0.568|GO:0009889_0.560|GO:0010556_0.560|GO:0031326_0.560|GO:0010468_0.558|GO:0044238_0.548|GO:0080090_0.548|GO:0048518_0.522|GO:0005634_0.518|GO:0006139_0.516|GO:0048522_0.514|GO:0034654_0.510|GO:0016070_0.509|GO:0032774_0.509|GO:0090304_0.509|GO:0141187_0.509|GO:0019219_0.506|GO:0006351_0.501|GO:0051252_0.501
|
IPR013087+218-247_220-242_251-282+|IPR036236+250-280+|IPR043359+109-285+
|
— | — | — |
PTHR45718+109-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
114-220;274-299
|
2.000
|
1-113;221-273
|
2gli_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
33141.240
|
6.804
|
1.500
|
19.064
|
14.047
|
47.826
|
52.174
|
10.368
|
8.696
|
56.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
181.420
|
212.433
|
203.750
|
387.088
|
331.044
|
365.017
|
109.200
|
139.036
|
119.301
|
48.898
|
79.071
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.287
|
0.728
|
1.032
|
-0.258
|
— |
-1.734
|
-1.500
|
— | — | — |
4.316
|
— | — |