SCN Proteipedia

Hg_chrom8_TN10mRNA_15484

Organism: Heterodera glycines Gene Locus: chr8:4732592-4742991 Feature type: polypeptide

Protein Sequence

Length: 1,711

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.897	1.087	0.776	0.846	1.598	1.379	0.779	1.081	1.026	1.106	0.664	0.997	0.958	0.809	1.372	1.57	0.786	0.859	0.809	0.43	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14625	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.763

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRIR,PMIKRRT	—	—	—	—	—	—	0.000	—	—	0.264	0.172	0.025	0.622	0.174	0.239	0.271	0.115	0.346	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004741	1.000	2.000	Hsc_gene_6752.t1;Hsc_gene_6752.t2	Hsc_gene_6752.t2	—	Q9EQW7.1 Kinesin-like protein KIF13A [Mus musculus]	KAF7638016.1 Kinesin motor domain-containing protein, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017	GO:0008150_0.974\|GO:0009987_0.937\|GO:0005575_0.934\|GO:0110165_0.928\|GO:0005622_0.859\|GO:0016020_0.816\|GO:0003674_0.776\|GO:0051179_0.734\|GO:0051234_0.715\|GO:0043226_0.681\|GO:0005737_0.673\|GO:0071944_0.653\|GO:0043229_0.648\|GO:0006810_0.642\|GO:0005488_0.637\|GO:0051641_0.626\|GO:0005886_0.619\|GO:0065007_0.579\|GO:0050789_0.555\|GO:0051649_0.555\|GO:0043227_0.539\|GO:0050794_0.525\|GO:0005515_0.521\|GO:0046907_0.521	IPR001752+13-375_15-367_21-367_100-121_230-247_266-284_317-338+\|IPR019821+265-276+\|IPR027417+15-407+\|IPR032405+371-428+\|IPR036961+14-391+	SM00129+13-375+	PF00225+21-367+Kinesin_motor_domain\|PF16183+371-428+Kinesin-associated	G3DSA:3.40.850.10:FF:000167+259-391+Uncharacterized_protein	PTHR47117+14-431+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;680-724;804-856;1354-1534;1638-1711	4.000	4-679;725-803;857-1353;1535-1637	6a20_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.660	189234.370	5.310	-28.500	27.119	8.124	52.951	47.049	13.267	13.852	51.315

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	2023.914	2227.128	2609.735	1714.299	1140.774	3298.096	2171.769	2879.728	1152.782	1974.465	1622.315

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.515	-0.497	-0.620	1.547	-0.593	-0.301	-0.265	—	—	—	—	—

No JSON data available for plots.

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