SCN Proteipedia

Hg_chrom8_TN10mRNA_15485

Organism: Heterodera glycines Gene Locus: chr8:4745315-4754104 Feature type: polypeptide

Protein Sequence

Length: 1,295

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.952	1.06	0.899	0.213	1.493	1.307	0.616	1.081	0.686	0.897	1.427	0.863	0.729	1.188	1.718	1.511	1.038	0.55	0.653	0.318	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14626	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRK,RKSK,RRKKRHR,KKRKKHKKKKRQKEK,RKNESDGEENEEERTQRR,KKWRSEESDGEENGKKRKK,KKHKKKKRQKEKEHNSKKK,KKKKRQKEKEHNSKKKDRN,KKKSHHRRKRSSSKQSKNSRKRASRSRSRTYSTSPERDHRHEKGRH	2-22	0.999	—	—	—	—	0.000	—	—	0.870	0.057	0.005	0.122	0.045	0.011	0.073	0.019	0.079	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002488	2.000	2.000	Hsc_gene_6750.t4;Hsc_gene_6750.t5	Hsc_gene_6750.t1;Hsc_gene_6750.t2;Hsc_gene_6750.t3	—	Q9VHB0.1 Protein Son [Drosophila melanogaster]	KAI1728404.1 g-patch domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0043484\|GO:0051726	GO:0008150_0.780\|GO:0009987_0.750\|GO:0005575_0.666\|GO:0110165_0.665\|GO:0008152_0.649\|GO:0009058_0.649\|GO:0009059_0.649\|GO:0010467_0.649\|GO:0043170_0.649\|GO:0044237_0.649\|GO:0044249_0.649\|GO:0065007_0.632\|GO:0005622_0.628\|GO:0006139_0.626\|GO:0044238_0.626\|GO:0016070_0.624\|GO:0090304_0.624\|GO:0016020_0.623\|GO:0050789_0.619\|GO:0043226_0.614\|GO:0050794_0.610\|GO:0043229_0.600\|GO:0003674_0.593\|GO:0005488_0.593\|GO:0043227_0.545\|GO:0019222_0.527\|GO:0031323_0.523\|GO:0060255_0.523\|GO:0043231_0.517\|GO:0080090_0.515\|GO:0005634_0.506	IPR000467+1160-1205_1162-1208_1163-1203+\|IPR014720+1223-1292_1224-1290_1224-1291+\|IPR032922+494-1292+	SM00358+1224-1291+\|SM00443+1160-1205+	PF00035+1224-1290+Double-stranded_RNA_binding_motif\|PF01585+1163-1203+G-patch_domain	—	PTHR46528+494-1292+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1156	1.000	1157-1295	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.900	144969.860	10.357	65.000	33.900	6.718	60.463	39.537	20.000	13.900	50.193

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	salmon	2755.263	4182.831	3354.358	2784.801	2350.976	2072.763	2826.451	2141.608	2454.451	2820.768	2663.775

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.549	-0.724	-0.159	-0.276	-0.167	0.458	—	0.543	—	—	—	—	—

No JSON data available for plots.

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