Hg_chrom8_TN10mRNA_15489
Organism: Heterodera glycines Gene Locus: chr8:4758396-4759792 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 1.368 | 1.307 | 0.451 | 0.98 | 1.341 | 0.7 | 0.98 | 0.581 | 1.59 | 1.089 | 1.538 | 0.908 | 0.628 | 0.934 | 0.84 | 0.857 | 1.188 | 0.503 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14629
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.659
|
0.114
|
0.007
|
0.538
|
0.145
|
0.282
|
0.246
|
0.010
|
0.061
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004738
|
2.000
|
1.000
|
Hsc_gene_6747.t1
|
Hsc_gene_6747.t1
|
— |
Q68FI4.1 Actin-related protein 2/3 complex subunit 5-A [Xenopus laevis]
|
KAI1715499.1 ARP2/3 complex 16 kDa subunit (p16-Arc) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005885|GO:0015629|GO:0030833|GO:0034314
|
GO:0005575_0.906|GO:0110165_0.899|GO:0005622_0.675|GO:0043226_0.602|GO:0016020_0.601|GO:0008150_0.557|GO:0043229_0.546
|
IPR006789+6-153_7-151_10-152+|IPR036743+1-153_10-152+
|
— |
PF04699+10-152+ARP2/3_complex_16_kDa_subunit_(p16-Arc)
|
G3DSA:1.25.40.190:FF:000003+6-153+Actin-related_protein_2/3_complex_subunit_5
|
PTHR12644+7-151+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-153
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
16984.300
|
6.234
|
-0.500
|
26.797
|
8.497
|
49.020
|
50.980
|
13.725
|
13.072
|
51.634
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
lightgreen
|
144.134
|
82.820
|
96.502
|
131.181
|
187.972
|
295.211
|
415.455
|
296.648
|
24.580
|
47.479
|
37.665
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.527
|
0.552
|
0.487
|
0.666
|
0.503
|
— |
0.631
|
— | — | — | — | — |
No JSON data available for plots.