Hg_chrom8_TN10mRNA_15490
Organism: Heterodera glycines Gene Locus: chr8:4760084-4762448 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 0.775 | 1.01 | 0.511 | 1.204 | 1.045 | 0.705 | 1.019 | 1.44 | 1.276 | 1.207 | 2.07 | 0.514 | 0.712 | 0.831 | 1.111 | 0.698 | 1.543 | 0.142 | 0.272 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.503
|
0.326
|
0.021
|
0.640
|
0.158
|
0.185
|
0.128
|
0.044
|
0.121
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004737
|
2.000
|
1.000
|
Hsc_gene_6746.t1
|
Hsc_gene_6746.t1
|
— |
P47208.1 T-complex protein 1 subunit delta [Caenorhabditis elegans]
|
KAI3415993.1 T-complex protein 1 subunit delta [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
|
GO:0005575_0.839|GO:0110165_0.828|GO:0005622_0.781|GO:0005737_0.708|GO:0008150_0.584
|
IPR002194+49-61_70-86_98-106+|IPR002423+44-537+|IPR012717+24-538_25-538+|IPR017998+26-537_46-62_68-86_98-117_387-409_421-433+|IPR027409+220-392_225-382+|IPR027410+154-419_155-418+|IPR027413+26-538_41-536+|IPR053374+33-537+
|
— |
PF00118+44-537+TCP-1/cpn60_chaperonin_family
|
G3DSA:3.50.7.10:FF:000010+225-382+T-complex_protein_1_subunit_delta
|
PTHR11353+26-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-540
|
9e2s_f
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
58399.670
|
6.719
|
1.500
|
26.852
|
5.000
|
46.296
|
53.704
|
14.074
|
12.778
|
52.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
884.290
|
829.305
|
925.166
|
1833.571
|
1954.006
|
1527.729
|
1565.344
|
1336.679
|
40.282
|
99.131
|
73.910
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.008
|
1.096
|
— |
-0.340
|
— |
-0.300
|
0.373
|
— |
5.707
|
4.336
|
— | — |
No JSON data available for plots.