Hg_chrom8_TN10mRNA_15492
Organism: Heterodera glycines Gene Locus: chr8:4763068-4764117 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 1.224 | 1.531 | 0.544 | 0.877 | 1.215 | 0.564 | 0.789 | 1.17 | 1.067 | 1.116 | 1.858 | 0.877 | 1.215 | 1.504 | 0.902 | 0.863 | 0.797 | 2.834 | 0.929 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.065
|
0.983
|
0.017
|
0.104
|
0.011
|
0.014
|
0.017
|
0.004
|
0.044
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002489
|
3.000
|
1.000
|
Hsc_gene_6744.t1
|
Hsc_gene_6744.t1;Hsc_gene_6744.t2
|
— | — |
CDJ98386.1 DNA polymerase lambda [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0006412|GO:0015934
|
GO:0005575_0.880|GO:0110165_0.876|GO:0005622_0.839|GO:0016020_0.797|GO:0043226_0.788|GO:0005737_0.778|GO:0043229_0.776|GO:0043227_0.748|GO:0043231_0.738|GO:0031090_0.573|GO:0005739_0.569|GO:0031967_0.564|GO:0005740_0.553|GO:0031966_0.553|GO:0019866_0.551|GO:0005743_0.550
|
IPR005996+46-143+
|
— | — | — |
PTHR15892+46-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
22223.270
|
8.251
|
3.500
|
30.000
|
11.579
|
51.579
|
48.421
|
16.316
|
13.684
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
206.146
|
227.030
|
392.174
|
310.777
|
352.735
|
267.727
|
401.418
|
350.164
|
46.111
|
4.048
|
22.075
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
0.315
|
-0.227
|
— |
-0.384
|
0.596
|
— |
0.340
|
— | — |
7.494
|
— | — |
No JSON data available for plots.