Hg_chrom8_TN10mRNA_15494
Organism: Heterodera glycines Gene Locus: chr8:4768423-4769414 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 0.949 | 1.262 | 0.563 | 1.361 | 0.419 | 0.729 | 1.02 | 1.088 | 1.269 | 1.175 | 2.161 | 1.247 | 1.099 | 1.166 | 0.525 | 1.071 | 0.989 | 0.628 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14634
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.448
|
0.488
|
0.012
|
0.745
|
0.110
|
0.164
|
0.117
|
0.044
|
0.154
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001423
|
3.000
|
2.000
|
Hsc_gene_6743.t1;Hsc_gene_6743.t2
|
Hsc_gene_6743.t1;Hsc_gene_6743.t2
|
— |
Q8VZP1.1 (DL)-glycerol-3-phosphatase 2 [Arabidopsis thaliana]
|
KAI1695846.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.706|GO:0005575_0.624|GO:0110165_0.614|GO:0008150_0.597|GO:0003824_0.579|GO:0005622_0.568|GO:0005737_0.519
|
IPR006439+81-196+|IPR023198+19-89+|IPR023214+8-202+|IPR036412+4-224+|IPR041492+8-196+
|
— |
PF13419+8-196+Haloacid_dehalogenase-like_hydrolase
|
— |
PTHR18901+3-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
243-245
|
1.000
|
1-242
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
27595.740
|
6.045
|
-1.500
|
30.612
|
9.796
|
46.531
|
53.469
|
15.510
|
15.102
|
48.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
148.014
|
29.856
|
60.002
|
63.870
|
142.963
|
270.340
|
237.467
|
152.878
|
101.497
|
212.423
|
164.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
0.960
|
— |
1.132
|
0.932
|
— |
-0.933
|
0.780
|
— | — | — | — | — |
No JSON data available for plots.