SCN Proteipedia

Hg_chrom8_TN10mRNA_15495

Organism: Heterodera glycines Gene Locus: chr8:4769822-4771444 Feature type: polypeptide

Protein Sequence

Length: 437

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.639	1.171	0.915	1.815	0.877	1.232	0.654	2.746	1.017	1.113	0.901	0.808	1.335	1.584	1.448	0.883	0.75	0.52	0.528	0.875	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14635	—	—	1.222	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RHRR,RRRR	—	—	—	—	—	—	0.000	—	—	0.630	0.075	0.013	0.617	0.092	0.148	0.086	0.019	0.058	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002491	3.000	1.000	Hsc_gene_6736.t1	Hsc_gene_6742.t1	—	Q9VPT8.1 Cleavage and polyadenylation specificity factor subunit 4 [Drosophila melanogaster]	KAI1724906.1 zinc finger c-x8-C-x5-C-x3-H type (and similar) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0008270\|GO:0046872	GO:0003674_0.834\|GO:0005575_0.772\|GO:0110165_0.759\|GO:0008150_0.687\|GO:0005622_0.686\|GO:0016020_0.649\|GO:0009987_0.636\|GO:0008152_0.555\|GO:0044238_0.555\|GO:0044237_0.533\|GO:0009058_0.530\|GO:0044249_0.522\|GO:0005488_0.518\|GO:0065007_0.507	IPR000571+172-196_197-223_197-224_199-221_225-251_225-252_253-277_253-279_278-304_280-302_280-303+\|IPR001878+324-340_325-339_374-391_375-391_376-391+\|IPR003113+82-175_99-156+\|IPR036855+198-222_277-302+\|IPR036875+322-344_358-391+\|IPR045348+162-405+	SM00343+324-340_375-391+\|SM00356+172-196_197-223_225-251_253-279_280-303+	PF00098+374-391+Zinc_knuckle\|PF00642+199-221_280-302+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)\|PF02192+99-156+PI3-kinase_family,_p85-binding_domain\|PF14608+231-249+RNA-binding,_Nab2-type_zinc_finger	G3DSA:4.10.1000.10:FF:000005+197-255+cleavage_and_polyadenylation_specificity_factor_subunit_4	PTHR23102+162-405+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-33;395-437	1.000	34-394	8e3q_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.896	49884.830	8.459	24.000	28.833	13.959	49.428	50.572	18.535	10.297	48.741

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	yellowgreen	275.319	450.344	244.670	311.378	310.917	267.483	488.853	377.750	183.513	147.613	162.999

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.109	-0.670	0.456	—	—	0.881	0.393	0.515	—	—	—	—	—

No JSON data available for plots.

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