Hg_chrom8_TN10mRNA_15497
Organism: Heterodera glycines Gene Locus: chr8:4772707-4773681 Feature type: polypeptideProtein Sequence
Length: 94
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.495 | 0.99 | 1.354 | 1.834 | 1.064 | 1.364 | 0.633 | 1.064 | 0.709 | 0.431 | 0.806 | 1.252 | 2.364 | 0.409 | 1.737 | 1.064 | 1.918 | 0.645 | 0.0 | 0.939 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14637
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.557
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.295
|
0.668
|
0.018
|
0.336
|
0.071
|
0.208
|
0.234
|
0.087
|
0.063
|
0.498
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001424
|
4.000
|
1.000
|
Hsc_gene_6745.t1
|
Hsc_gene_6745.t1
|
— |
Q9VYD7.1 Mitochondrial import inner membrane translocase subunit Tim9 [Drosophila melanogaster]
|
KJH40977.1 Tim10/DDP family zinc finger [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.907|GO:0110165_0.899|GO:0008150_0.777|GO:0005622_0.711|GO:0009987_0.701|GO:0016020_0.675|GO:0043226_0.665|GO:0005737_0.659|GO:0043229_0.637|GO:0043227_0.616|GO:0043231_0.608
|
IPR004217+14-59+|IPR035427+1-79_15-66+|IPR050673+4-59+
|
— |
PF02953+14-59+Tim10/DDP_family_zinc_finger
|
— |
PTHR13172+4-59+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-94
|
7cgp_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
10866.070
|
7.059
|
1.000
|
29.787
|
13.830
|
58.511
|
41.489
|
15.957
|
13.830
|
52.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
16.224
|
20.560
|
12.714
|
16.057
|
15.713
|
9.344
|
17.229
|
20.625
|
38.518
|
0.000
|
16.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.927
|
— | — | — | — |
0.893
|
1.035
|
— | — | — | — | — | — |
No JSON data available for plots.