Hg_chrom8_TN10mRNA_15502
Organism: Heterodera glycines Gene Locus: chr8:4782694-4786190 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.774 | 1.048 | 0.897 | 0.592 | 1.359 | 0.825 | 0.715 | 1.395 | 1.383 | 1.276 | 0.618 | 1.515 | 1.073 | 0.66 | 1.489 | 1.165 | 0.95 | 0.91 | 1.155 | 1.073 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14642
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.698
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-26
|
0.995
|
16-38
|
0.998
|
— | — |
0.000
|
— | — |
0.081
|
0.977
|
0.010
|
0.169
|
0.048
|
0.092
|
0.056
|
0.058
|
0.053
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011920
|
1.000
|
1.000
|
Hsc_gene_6738.t1
|
Hsc_gene_6738.t1
|
— |
Q23295.2 Mitochondrial-processing peptidase subunit beta [Caenorhabditis elegans]
|
KAH7729347.1 mitochondria processing peptidase subunit beta [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0046872
|
GO:0005575_0.842|GO:0110165_0.834|GO:0005622_0.755|GO:0016020_0.744|GO:0005737_0.720|GO:0043226_0.699|GO:0008150_0.689|GO:0043229_0.684|GO:0043227_0.654|GO:0043231_0.651
|
IPR001431+72-95+|IPR007863+206-384+|IPR011249+39-248_269-455+|IPR011765+52-199+|IPR050361+39-442+
|
— |
PF00675+52-199+Insulinase_(Peptidase_family_M16)|PF05193+206-384+Peptidase_M16_inactive_domain
|
G3DSA:3.30.830.10:FF:000002+30-249+Mitochondrial-processing_peptidase_subunit_beta
|
PTHR11851+39-442+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-466
|
4u3f_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
52974.110
|
6.323
|
-1.500
|
27.253
|
11.803
|
48.927
|
51.073
|
14.163
|
13.090
|
47.210
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
paleturquoise
|
1870.077
|
1412.252
|
1704.943
|
2021.109
|
2271.034
|
1850.576
|
2261.350
|
1625.732
|
2396.489
|
1454.096
|
1857.979
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.380
|
0.354
|
0.137
|
-0.281
|
0.300
|
-0.292
|
0.620
|
— | — | — | — | — |
No JSON data available for plots.