Hg_chrom8_TN10mRNA_15503
Organism: Heterodera glycines Gene Locus: chr8:4786132-4790400 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.175 | 1.049 | 0.525 | 0.56 | 0.842 | 2.129 | 1.16 | 0.812 | 0.441 | 0.927 | 0.656 | 0.531 | 0.351 | 1.076 | 1.621 | 1.599 | 1.332 | 0.985 | 0.417 | 0.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14643
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRQTKAPKAERRKSV,RKQTAQQWPDFSKRCRA,KRTEEEEGQAAAGRGRRH,RRHEVQLVRRVPIRHRRH
|
— | — |
3-42
|
0.633
|
— | — |
0.000
|
— | — |
0.836
|
0.115
|
0.021
|
0.389
|
0.047
|
0.017
|
0.037
|
0.017
|
0.073
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011921
|
1.000
|
1.000
|
Hsc_gene_6739.t1
|
Hsc_gene_6739.t1
|
— | — |
KAI1710932.1 TFIIS helical bundle-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357|GO:0016592
|
GO:0005575_0.928|GO:0110165_0.920|GO:0005622_0.853|GO:0016020_0.828|GO:0043226_0.803|GO:0043229_0.803|GO:0043227_0.736|GO:0043231_0.722|GO:0005634_0.705|GO:0031974_0.626|GO:0031981_0.626|GO:0043233_0.626|GO:0070013_0.626|GO:0005654_0.597|GO:0008150_0.593|GO:0009987_0.547|GO:0065007_0.538|GO:0003674_0.523|GO:0050789_0.523|GO:0005488_0.515|GO:0050794_0.512
|
IPR017923+85-133+|IPR035441+50-148_55-147+|IPR042376+62-413+
|
— |
PF08711+85-133+TFIIS_helical_bundle-like_domain
|
— |
PTHR15201+62-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
133-554
|
1.000
|
1-132
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.952
|
58526.940
|
10.626
|
28.500
|
21.841
|
4.332
|
53.971
|
46.029
|
13.899
|
7.942
|
60.289
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5658.424
|
10580.914
|
7998.913
|
3553.520
|
2960.337
|
3823.399
|
3447.779
|
5716.215
|
8160.042
|
4355.169
|
5985.829
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.633
|
-1.711
|
-1.062
|
-0.295
|
0.384
|
— |
0.478
|
-0.587
|
— | — | — | — | — |
No JSON data available for plots.