SCN Proteipedia

Hg_chrom8_TN10mRNA_15505

Organism: Heterodera glycines Gene Locus: chr8:4793934-4799934 Feature type: polypeptide

Protein Sequence

Length: 1,291

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.694	0.919	0.958	0.775	1.033	1.47	0.553	2.091	1.084	1.664	0.622	1.367	1.291	0.938	1.391	1.062	0.775	0.845	0.894	0.866	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14645	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|lysosome_vacuole	—	KRKL	—	—	—	—	—	—	0.000	—	—	0.296	0.276	0.022	0.571	0.294	0.679	0.527	0.019	0.313	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002492	1.000	3.000	Hsc_gene_6741.t1;Hsc_gene_6741.t2;Hsc_gene_6741.t3	Hsc_gene_6741.t1;Hsc_gene_6741.t2;Hsc_gene_6741.t3;Hsc_gene_6742.t1	—	Q94125.6 Phosphatidylinositol 3-kinase age-1 [Caenorhabditis elegans]	KAH7724728.1 Phosphatidylinositol 3- and 4-kinase family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016301\|GO:0046854	GO:0008150_0.970\|GO:0009987_0.898\|GO:0005575_0.864\|GO:0110165_0.864\|GO:0065007_0.765\|GO:0005622_0.758\|GO:0003674_0.755\|GO:0050789_0.754\|GO:0008152_0.732\|GO:0016020_0.722\|GO:0050896_0.711\|GO:0044237_0.706\|GO:0050794_0.705\|GO:0005737_0.681\|GO:0009058_0.675\|GO:0044249_0.661\|GO:0044238_0.657\|GO:0003824_0.621\|GO:0051716_0.579\|GO:0016740_0.576\|GO:0006793_0.572\|GO:0006796_0.570\|GO:0016772_0.526\|GO:0006629_0.524\|GO:0032502_0.521\|GO:0048856_0.521\|GO:0008610_0.519\|GO:0016301_0.519\|GO:0044255_0.518\|GO:0019637_0.517\|GO:0048518_0.517\|GO:0046486_0.513\|GO:0006644_0.512\|GO:0006650_0.512\|GO:0090407_0.511\|GO:0008654_0.510\|GO:0006661_0.507\|GO:0045017_0.507\|GO:0046474_0.507\|GO:0046488_0.507\|GO:0042221_0.501	IPR000008+469-605+\|IPR000341+313-410_315-413_330-411+\|IPR000403+983-1276_1016-1239_1016-1291+\|IPR001263+714-894_714-927_738-884+\|IPR002420+466-654_487-609+\|IPR003113+82-172_97-175_99-174+\|IPR011009+925-1284+\|IPR015433+346-1286+\|IPR016024+722-876+\|IPR018936+1125-1145+\|IPR029071+173-416+\|IPR035892+463-611_465-634+\|IPR036940+1072-1277+\|IPR042236+693-918+	SM00143+97-175+\|SM00144+315-413+\|SM00145+714-927+\|SM00146+1016-1291+\|SM00239+469-605+	PF00454+1016-1239+Phosphatidylinositol_3-_and_4-kinase\|PF00613+738-884+Phosphoinositide_3-kinase_family,_accessory_domain_(PIK_domain)\|PF00792+487-609+Phosphoinositide_3-kinase_C2\|PF00794+330-411+PI3-kinase_family,_ras-binding_domain\|PF02192+99-174+PI3-kinase_family,_p85-binding_domain	—	PTHR10048+346-1286+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-33	1.000	34-1291	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.614	147969.260	7.214	20.000	26.569	12.936	48.412	51.588	15.105	11.464	44.694

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	3553.710	7765.040	4211.380	3654.192	2817.724	2683.801	4276.897	3405.674	1574.830	3560.841	2709.693

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.113	-1.224	-0.096	-0.407	—	0.683	0.239	0.471	—	—	—	—	—

No JSON data available for plots.

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