Hg_chrom8_TN10mRNA_15506
Organism: Heterodera glycines Gene Locus: chr8:4800303-4801839 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 0.844 | 1.246 | 0.556 | 1.344 | 0.517 | 0.72 | 1.008 | 1.075 | 1.308 | 1.161 | 2.135 | 1.232 | 1.086 | 1.152 | 0.518 | 1.124 | 1.039 | 0.62 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14646
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.467
|
0.473
|
0.009
|
0.750
|
0.117
|
0.169
|
0.128
|
0.050
|
0.142
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001423
|
3.000
|
2.000
|
Hsc_gene_6743.t1;Hsc_gene_6743.t2
|
Hsc_gene_6743.t1;Hsc_gene_6743.t2
|
— |
Q8VZP1.1 (DL)-glycerol-3-phosphatase 2 [Arabidopsis thaliana]
|
KAI1714145.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.726|GO:0005575_0.617|GO:0008150_0.614|GO:0110165_0.608|GO:0003824_0.597|GO:0005622_0.561|GO:0005737_0.507
|
IPR006439+146-199+|IPR023198+19-91+|IPR023214+8-205+|IPR036412+5-227+|IPR041492+8-199+
|
— |
PF13419+8-199+Haloacid_dehalogenase-like_hydrolase
|
— |
PTHR18901+3-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-248
|
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
27923.160
|
6.045
|
-1.500
|
30.242
|
9.677
|
46.371
|
53.629
|
15.323
|
14.919
|
48.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
535.317
|
206.846
|
334.446
|
323.987
|
519.793
|
754.318
|
911.954
|
659.694
|
346.499
|
690.499
|
543.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.464
|
0.510
|
— |
0.650
|
0.552
|
0.284
|
— |
0.612
|
— | — | — | — | — |
No JSON data available for plots.