Hg_chrom8_TN10mRNA_15507
Organism: Heterodera glycines Gene Locus: chr8:4802185-4803741 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.491 | 0.983 | 1.536 | 0.243 | 0.822 | 1.264 | 0.671 | 1.056 | 1.252 | 1.142 | 1.28 | 1.657 | 0.978 | 1.354 | 1.006 | 0.805 | 0.924 | 0.96 | 1.625 | 1.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14647
|
— | — |
1.222
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.103
|
0.948
|
0.067
|
0.256
|
0.032
|
0.008
|
0.008
|
0.004
|
0.066
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002489
|
3.000
|
1.000
|
Hsc_gene_6744.t1
|
Hsc_gene_6744.t1;Hsc_gene_6744.t2
|
— | — |
KAI3416069.1 hypothetical protein GPALN_005621 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0006412|GO:0015934
|
GO:0005575_0.898|GO:0110165_0.884|GO:0005622_0.847|GO:0016020_0.796|GO:0043226_0.790|GO:0005737_0.785|GO:0043229_0.769|GO:0043227_0.747|GO:0043231_0.740|GO:0031090_0.577|GO:0005739_0.571|GO:0031967_0.563|GO:0005740_0.555|GO:0031966_0.555|GO:0005743_0.551|GO:0019866_0.551
|
IPR005996+2-95+
|
— | — | — |
PTHR15892+2-95+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-142
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
16343.640
|
7.274
|
1.500
|
28.873
|
11.972
|
49.296
|
50.704
|
15.493
|
13.380
|
47.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
violet
|
69.048
|
44.785
|
35.002
|
37.069
|
39.281
|
30.609
|
110.429
|
75.773
|
128.757
|
65.663
|
92.703
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.588
|
— | — | — | — |
1.864
|
1.204
|
0.687
|
— | — | — | — | — |
No JSON data available for plots.