Hg_chrom8_TN10mRNA_15508
Organism: Heterodera glycines Gene Locus: chr8:4803580-4804728 Feature type: polypeptideProtein Sequence
Length: 135
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 0.689 | 0.943 | 1.533 | 0.864 | 1.14 | 0.617 | 2.593 | 0.988 | 1.101 | 1.01 | 0.871 | 2.469 | 0.285 | 1.663 | 0.952 | 1.457 | 0.561 | 0.57 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14648
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.314
|
0.604
|
0.027
|
0.379
|
0.192
|
0.147
|
0.262
|
0.293
|
0.075
|
0.484
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001424
|
4.000
|
1.000
|
Hsc_gene_6745.t1
|
Hsc_gene_6745.t1
|
— |
Q9VYD7.1 Mitochondrial import inner membrane translocase subunit Tim9 [Drosophila melanogaster]
|
KJH40977.1 Tim10/DDP family zinc finger [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.920|GO:0016020_0.768|GO:0008150_0.767|GO:0005622_0.757|GO:0043226_0.737|GO:0005737_0.722|GO:0043229_0.719|GO:0009987_0.712|GO:0043227_0.706|GO:0043231_0.691|GO:0005739_0.503
|
IPR004217+15-50+|IPR035427+2-70_15-50+|IPR050673+4-54+
|
— |
PF02953+15-50+Tim10/DDP_family_zinc_finger
|
— |
PTHR13172+4-54+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-135
|
7cgp_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
15870.100
|
8.995
|
9.500
|
30.370
|
18.519
|
53.333
|
46.667
|
20.000
|
10.370
|
42.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightgreen
|
52.027
|
16.580
|
20.689
|
35.270
|
43.937
|
27.394
|
88.779
|
68.386
|
36.113
|
87.644
|
65.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.951
|
0.873
|
— |
-0.665
|
1.708
|
1.216
|
0.521
|
— | — | — | — | — |
No JSON data available for plots.