Hg_chrom8_TN10mRNA_15509
Organism: Heterodera glycines Gene Locus: chr8:4813914-4815627 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 0.758 | 0.911 | 0.432 | 1.546 | 0.964 | 1.193 | 0.627 | 0.891 | 0.881 | 0.835 | 1.327 | 1.462 | 1.012 | 2.302 | 1.038 | 0.534 | 0.684 | 1.928 | 0.221 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14649
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRKRRR,RRIETQRKESKRRAH,KRRAHERIGKQKKHQK,KKRWEEEEVEEEEDNRPRR,KRWEEEEVEEEEDNRPRRA,QRKESKRRAHERIGKQKKHQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.689
|
0.118
|
0.065
|
0.434
|
0.134
|
0.032
|
0.027
|
0.002
|
0.104
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000925
|
4.000
|
2.000
|
Hsc_gene_6704.t1;Hsc_gene_6740.t1
|
— | — | — |
KAI3415955.1 hypothetical protein GPALN_005516 [Globodera pallida]
|
MEP7070760
|
0.420
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-162;311-399
|
1.000
|
163-310
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
45076.830
|
9.960
|
12.500
|
32.331
|
9.774
|
49.875
|
50.125
|
18.045
|
14.286
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
325.012
|
494.405
|
425.443
|
300.642
|
204.715
|
209.738
|
134.483
|
247.304
|
782.071
|
79.101
|
380.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.446
|
-0.855
|
-0.392
|
-0.587
|
— |
-0.634
|
— |
-0.740
|
— | — | — | — | — |
No JSON data available for plots.