Hg_chrom8_TN10mRNA_15510
Organism: Heterodera glycines Gene Locus: chr8:4816381-4817236 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.375 | 1.25 | 0.88 | 0.927 | 1.344 | 2.206 | 0.64 | 1.613 | 1.434 | 1.09 | 1.222 | 1.265 | 1.195 | 0.62 | 0.987 | 1.382 | 0.529 | 0.57 | 0.414 | 1.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14650
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.928
|
0.230
|
0.004
|
0.367
|
0.036
|
0.038
|
0.023
|
0.003
|
0.077
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001425
|
4.000
|
1.000
|
Hsc_gene_6735.t1
|
Hsc_gene_6735.t1
|
— | — |
KAI3415988.1 hypothetical protein GPALN_005546 [Globodera pallida]
|
MCI9385379
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001228|GO:0003677|GO:0003700|GO:0005634|GO:0006355|GO:0006357
|
GO:0008150_0.931|GO:0005575_0.919|GO:0110165_0.915|GO:0005622_0.897|GO:0009987_0.882|GO:0065007_0.861|GO:0043226_0.853|GO:0050789_0.853|GO:0043229_0.846|GO:0050794_0.842|GO:0016020_0.838|GO:0003674_0.820|GO:0043227_0.809|GO:0005488_0.804|GO:0008152_0.796|GO:0043170_0.796|GO:0050896_0.796|GO:0043231_0.793|GO:0044238_0.781|GO:0051716_0.780|GO:0009058_0.778|GO:0009059_0.778|GO:0044237_0.778|GO:0044249_0.778|GO:0010467_0.776|GO:0048518_0.773|GO:0019222_0.770|GO:0032501_0.767|GO:0031323_0.766|GO:0006139_0.765|GO:0032502_0.760|GO:0048856_0.760|GO:0048522_0.754|GO:0060255_0.754|GO:0090304_0.753|GO:0080090_0.751|GO:0048519_0.749|GO:0034654_0.746|GO:0009889_0.744|GO:0023052_0.743|GO:0016070_0.742|GO:0031326_0.741|GO:0007154_0.740|GO:0048523_0.740|GO:0141187_0.740|GO:0010556_0.738|GO:0007275_0.736|GO:0010468_0.735|GO:0009893_0.730|GO:0032774_0.730|GO:0007165_0.729|GO:0031325_0.724|GO:0010604_0.723|GO:0048731_0.723|GO:0019219_0.718|GO:0006351_0.717|GO:0009891_0.717|GO:0031328_0.717|GO:0005634_0.714|GO:0051252_0.714|GO:0010557_0.713|GO:2001141_0.713|GO:0006355_0.709|GO:0097159_0.708|GO:0009892_0.702|GO:0045935_0.700|GO:0003676_0.699|GO:0031324_0.698|GO:0048513_0.698|GO:0010605_0.697|GO:0006366_0.696|GO:0051254_0.693|GO:0007166_0.691|GO:0009890_0.691|GO:0031327_0.691|GO:0006357_0.690|GO:0010558_0.690|GO:0032991_0.690|GO:0045893_0.690|GO:1902680_0.690|GO:0043228_0.686|GO:0043232_0.686|GO:0045934_0.684|GO:0051253_0.684|GO:0045892_0.682|GO:1902679_0.682|GO:0045944_0.680|GO:0000122_0.678|GO:0072359_0.677|GO:0007507_0.676|GO:0003677_0.673|GO:0007219_0.670|GO:0007221_0.670|GO:0043565_0.670|GO:0003690_0.668|GO:1990837_0.668|GO:0000976_0.666|GO:0001067_0.666|GO:0140110_0.665|GO:0003700_0.659|GO:0000977_0.656|GO:0000987_0.656|GO:0000978_0.654|GO:0001216_0.654|GO:0000785_0.650|GO:0000981_0.650|GO:0001228_0.650|GO:0005694_0.650|GO:0031974_0.623|GO:0043233_0.623|GO:0070013_0.621|GO:0031981_0.612|GO:0005654_0.581|GO:0005667_0.553|GO:0005737_0.539|GO:0005515_0.446|GO:0006950_0.400|GO:0030154_0.388|GO:0048869_0.388|GO:0048468_0.376|GO:0048583_0.374|GO:0010646_0.371|GO:0023051_0.371|GO:0051239_0.368|GO:0050793_0.366|GO:0009966_0.364|GO:0044419_0.362|GO:0002376_0.361|GO:0007399_0.360|GO:0008283_0.360|GO:0009607_0.360|GO:0009719_0.360|GO:0040007_0.360|GO:0009605_0.359|GO:0043207_0.359|GO:0051707_0.358|GO:0009653_0.356|GO:0009888_0.356|GO:0010628_0.356|GO:0022008_0.355|GO:0023056_0.355|GO:0045595_0.355|GO:0048584_0.354|GO:0006952_0.353|GO:0010647_0.353|GO:2000026_0.353|GO:0051240_0.352|GO:0098542_0.351
|
IPR008967+51-174+|IPR015351+70-177_95-174+|IPR037095+78-175+|IPR040159+99-174+
|
SM01267+70-177+
|
PF09271+95-174+LAG1,_DNA_binding
|
— |
PTHR10665+99-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
21545.280
|
7.346
|
3.000
|
29.032
|
12.366
|
55.914
|
44.086
|
16.129
|
12.903
|
41.398
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
145.550
|
114.461
|
98.780
|
87.573
|
82.665
|
101.388
|
143.255
|
97.784
|
367.637
|
88.841
|
208.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.442
|
-0.523
|
— | — |
0.308
|
0.507
|
— |
0.691
|
— | — | — | — | — |
No JSON data available for plots.