Hg_chrom8_TN10mRNA_15511
Organism: Heterodera glycines Gene Locus: chr8:4817493-4818778 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.455 | 0.78 | 1.016 | 1.734 | 0.466 | 1.289 | 0.798 | 0.559 | 0.993 | 1.585 | 0.339 | 2.3 | 1.086 | 0.859 | 1.71 | 1.516 | 1.191 | 1.1 | 0.859 | 0.329 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14651
|
— | — |
1.333
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.505
|
0.382
|
0.014
|
0.521
|
0.097
|
0.124
|
0.183
|
0.396
|
0.149
|
0.446
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001425
|
4.000
|
1.000
|
Hsc_gene_6735.t1
|
Hsc_gene_6735.t1
|
— |
V6CLJ5.1 Suppressor of hairless protein homolog [Caenorhabditis elegans]
|
XP_002633635.1 Protein CBR-LAG-1 [Caenorhabditis briggsae];CAP25987.1 Protein CBR-LAG-1 [Caenorhabditis briggsae]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0001228|GO:0003677|GO:0003700|GO:0005634|GO:0006355|GO:0006357
|
GO:0008150_0.938|GO:0005575_0.908|GO:0110165_0.899|GO:0065007_0.891|GO:0050789_0.883|GO:0009987_0.878|GO:0050794_0.869|GO:0050896_0.841|GO:0003674_0.824|GO:0016020_0.820|GO:0051716_0.820|GO:0007154_0.812|GO:0023052_0.812|GO:0005622_0.808|GO:0032501_0.807|GO:0007165_0.797|GO:0032502_0.776|GO:0048856_0.776|GO:0005488_0.772|GO:0048518_0.772|GO:0048522_0.765|GO:0008152_0.759|GO:0048519_0.758|GO:0043226_0.755|GO:0007275_0.753|GO:0043170_0.753|GO:0044238_0.748|GO:0019222_0.742|GO:0044237_0.742|GO:0009058_0.738|GO:0031323_0.737|GO:0043229_0.737|GO:0043227_0.731|GO:0048523_0.731|GO:0044249_0.730|GO:0060255_0.730|GO:0007166_0.729|GO:0009059_0.727|GO:0080090_0.727|GO:0009893_0.720|GO:0010467_0.719|GO:0048513_0.717|GO:0009889_0.716|GO:0031326_0.716|GO:0031325_0.715|GO:0010468_0.712|GO:0010556_0.712|GO:0006139_0.710|GO:0010604_0.710|GO:0034654_0.709|GO:0043231_0.709|GO:0009891_0.705|GO:0031328_0.705|GO:0090304_0.704|GO:0010557_0.703|GO:0141187_0.702|GO:0016070_0.701|GO:0032774_0.699|GO:0019219_0.698|GO:0051252_0.697|GO:0006351_0.695|GO:0006355_0.695|GO:2001141_0.695|GO:0009892_0.690|GO:0045935_0.687|GO:0051254_0.685|GO:0010605_0.684|GO:0031324_0.684|GO:0006366_0.683|GO:0045893_0.683|GO:1902680_0.683|GO:0006357_0.681|GO:0009890_0.680|GO:0010558_0.680|GO:0031327_0.680|GO:0045944_0.678|GO:0045934_0.677|GO:0045892_0.676|GO:0051253_0.676|GO:1902679_0.676|GO:0000122_0.674|GO:0007219_0.670|GO:0097159_0.669|GO:0003676_0.662|GO:0003677_0.662|GO:0003690_0.662|GO:0043565_0.662|GO:1990837_0.662|GO:0000976_0.660|GO:0001067_0.660|GO:0000977_0.654|GO:0000987_0.654|GO:0000978_0.650|GO:0032991_0.614|GO:0005515_0.602|GO:0005634_0.599|GO:0048869_0.578|GO:0030154_0.577|GO:0043228_0.575|GO:0043232_0.575|GO:0048468_0.564|GO:0050793_0.551|GO:0009653_0.549|GO:0005694_0.548|GO:0000785_0.546|GO:0005667_0.546|GO:0045595_0.543|GO:0048646_0.535|GO:0048731_0.532|GO:0009887_0.527|GO:0051301_0.525|GO:0045165_0.521|GO:0001708_0.518|GO:0008134_0.502
|
IPR015350+1-71+|IPR036358+2-103+|IPR037095+103-114+|IPR040159+2-112+
|
— |
PF09270+1-71+Beta-trefoil_DNA-binding_domain
|
— |
PTHR10665+2-112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
3brf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
19855.990
|
8.232
|
5.000
|
20.112
|
7.263
|
46.369
|
53.631
|
11.732
|
8.380
|
54.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
68.412
|
8.417
|
9.351
|
9.003
|
6.767
|
8.962
|
125.875
|
92.602
|
51.946
|
162.476
|
115.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.822
|
3.264
|
0.587
|
— | — |
-4.348
|
— | — |
No JSON data available for plots.